Overall Survival Prediction in Glioblastoma With Radiomic Features Using Machine Learning

被引:89
作者
Baid, Ujjwal [1 ]
Rane, Swapnil U. [2 ]
Talbar, Sanjay [1 ]
Gupta, Sudeep [3 ]
Thakur, Meenakshi H. [4 ]
Moiyadi, Aliasgar [5 ]
Mahajan, Abhishek [4 ]
机构
[1] Shri Guru Gobind Singhji Inst Engn & Technol, Dept Elect & Telecommun Engn, Nanded, India
[2] HBNI, Dept Pathol, ACTREC, Tata Mem Ctr, Navi Mumbai, India
[3] HBNI, Dept Med Oncol, ACTREC, Tata Mem Ctr, Navi Mumbai, India
[4] HBNI, Tata Mem Ctr, Dept Radiodiag & Imaging, Tata Mem Hosp, Mumbai, Maharashtra, India
[5] HBNI, Tata Mem Ctr, Dept Neurosurg Serv, Tata Mem Hosp, Mumbai, Maharashtra, India
关键词
brain tumor; glioblastoma; overall survival; radiomic; machine learning; SIGNATURE;
D O I
10.3389/fncom.2020.00061
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Glioblastoma is a WHO grade IV brain tumor, which leads to poor overall survival (OS) of patients. For precise surgical and treatment planning, OS prediction of glioblastoma (GBM) patients is highly desired by clinicians and oncologists. Radiomic research attempts at predicting disease prognosis, thus providing beneficial information for personalized treatment from a variety of imaging features extracted from multiple MR images. In this study, first-order, intensity-based volume and shape-based and textural radiomic features are extracted from fluid-attenuated inversion recovery (FLAIR) and T1ce MRI data. The region of interest is further decomposed with stationary wavelet transform with low-pass and high-pass filtering. Further, radiomic features are extracted on these decomposed images, which helped in acquiring the directional information. The efficiency of the proposed algorithm is evaluated on Brain Tumor Segmentation (BraTS) challenge training, validation, and test datasets. The proposed approach achieved 0.695, 0.571, and 0.558 on BraTS training, validation, and test datasets. The proposed approach secured the third position in BraTS 2018 challenge for the OS prediction task.
引用
收藏
页数:9
相关论文
共 29 条
[1]  
[Anonymous], 2019, FRONT ONCOL
[2]  
[Anonymous], **DATA OBJECT**, DOI DOI 10.7937/K9/TCIA.2017.KLXWJJ1Q
[3]  
[Anonymous], 2019, ARXIV181101328
[4]  
BAID U, 2020, FRONT COMPUT NEUROSC, V0014
[5]   Deep Learning Radiomics Algorithm for Gliomas (DRAG) Model: A Novel Approach Using 3D UNET Based Deep Convolutional Neural Network for Predicting Survival in Gliomas [J].
Baid, Ujjwal ;
Talbar, Sanjay ;
Rane, Swapnil ;
Gupta, Sudeep ;
Thakur, Meenakshi H. ;
Moiyadi, Aliasgar ;
Thakur, Siddhesh ;
Mahajan, Abhishek .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, BRAINLES 2018, PT II, 2019, 11384 :369-379
[6]   Data Descriptor: Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features [J].
Bakas, Spyridon ;
Akbari, Hamed ;
Sotiras, Aristeidis ;
Bilello, Michel ;
Rozycki, Martin ;
Kirby, Justin S. ;
Freymann, John B. ;
Farahani, Keyvan ;
Davatzikos, Christos .
SCIENTIFIC DATA, 2017, 4
[7]   Multi-planar Spatial-ConvNet for Segmentation and Survival Prediction in Brain Cancer [J].
Banerjee, Subhashis ;
Mitra, Sushmita ;
Shankar, B. Uma .
BRAINLESION: GLIOMA, MULTIPLE SCLEROSIS, STROKE AND TRAUMATIC BRAIN INJURIES, BRAINLES 2018, PT II, 2019, 11384 :94-104
[8]  
Chaddad A., 2019, Cancers, V11
[9]   Prediction of survival with multi-scale radiomic analysis in glioblastoma patients [J].
Chaddad, Ahmad ;
Sabri, Siham ;
Niazi, Tamim ;
Abdulkarim, Bassam .
MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, 2018, 56 (12) :2287-2300
[10]   A quantitative study of shape descriptors from glioblastoma multiforme phenotypes for predicting survival outcome [J].
Chaddad, Ahmad ;
Desrosiers, Christian ;
Hassan, Lama ;
Tanougast, Camel .
BRITISH JOURNAL OF RADIOLOGY, 2016, 89 (1068)