Using DNA Barcoding to Assess Caribbean Reef Fish Biodiversity: Expanding Taxonomic and Geographic Coverage

被引：94

作者：

Weigt, Lee A. ^{[1
]}

Baldwin, Carole C. ^{[2
]}

Driskell, Amy ^{[1
]}

Smith, David G. ^{[2
]}

Ormos, Andrea ^{[1
]}

Reyier, Eric A. ^{[3
]}

机构：

[1] Smithsonian Inst, Labs Analyt Biol, Natl Museum Nat Hist, Washington, DC 20560 USA

[2] Smithsonian Inst, Natl Museum Nat Hist, Dept Vertebrate Zool, Washington, DC 20560 USA

[3] Kennedy Space Ctr, IHA Environm Serv, Kennedy Space Ctr, FL USA

来源：

PLOS ONE | 2012年 / 7卷 / 07期

关键词：

FRESH-WATER FISHES; C-OXIDASE-I; NUCLEOTIDE; EXTRACTION; SPECIATION; TELEOSTEI; IDENTIFICATION; DIVERGENCE; DIVERSITY; GENETICS;

D O I：

10.1371/journal.pone.0041059

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

This paper represents a DNA barcode data release for 3,400 specimens representing 521 species of fishes from 6 areas across the Caribbean and western central Atlantic regions (FAO Region 31). Merged with our prior published data, the combined efforts result in 3,964 specimens representing 572 species of marine fishes and constitute one of the most comprehensive DNA barcoding "coverages" for a region reported to date. The barcode data are providing new insights into Caribbean shorefish diversity, allowing for more and more accurate DNA-based identifications of larvae, juveniles, and unknown specimens. Examples are given correcting previous work that was erroneous due to database incompleteness.

引用

页数：7

共 51 条

[1] DNA barcoding of the ichthyofauna of Taal Lake, Philippines [J].

Aquilino, Sean V. L. ;

Tango, Jazzlyn M. ;

Fontanilla, Ian K. C. ;

Pagulayan, Roberto C. ;

Basiao, Zubaida U. ;

Ong, Perry S. ;

Quilang, Jonas P. .

MOLECULAR ECOLOGY RESOURCES, 2011, 11 (04) :612-619

[2] Single fish egg DNA extraction for PCR amplification [J].

Aranishi, F .

CONSERVATION GENETICS, 2006, 7 (01) :153-156

[3] DNA barcoding for conservation and management of Amazonian commercial fish [J].

Ardura, Alba ;

Linde, Ana Rosa ;

Moreira, Josino C. ;

Garcia-Vazquez, Eva .

BIOLOGICAL CONSERVATION, 2010, 143 (06) :1438-1443

[4] Cytochrome c oxidase subunit 1 barcode data of fish of the Nayband National Park in the Persian Gulf and analysis using meta-data flag several cryptic species [J].

Asgharian, Hosseinali ;

Sahafi, Homayoun Hosseinzadeh ;

Ardalan, Aria Ashja ;

Shekarriz, Shahrokh ;

Elahi, Elahe .

MOLECULAR ECOLOGY RESOURCES, 2011, 11 (03) :461-472

[5]

Baldwin CC, 2011, ZOOTAXA, P1

[6] A New Species of Soapfish (Teleostei: Serranidae: Rypticus), with Redescription of R. subbifrenatus and Comments on the Use of DNA Barcoding in Systematic Studies [J].

Baldwin, Carole C. ;

Weigt, Lee A. .

COPEIA, 2012, (01) :23-36

[7] Seven new species within western Atlantic Starksia atlantica, S. lepicoelia, and S. sluiteri (Teleostei, Labrisomidae), with comments on congruence of DNA barcodes and species [J].

Baldwin, Carole C. ;

Castillo, Cristina I. ;

Weigt, Lee A. ;

Victor, Benjamin C. .

ZOOKEYS, 2011, (79) :21-72

[8]

Baldwin Carole C., 2009, Smithsonian Contributions to the Marine Sciences, P111

[9]

Baldwin CC, 2009, ZOOTAXA, P1

[10]

Baldwin CC, 2003, B MAR SCI, V72, P639

← 1 2 3 4 5 6 →