MicroRNA expression in serum samples of sulfur mustard veterans as a diagnostic gateway to improve care

被引:20
作者
Gharbi, Sedigheh [1 ]
Khateri, Shahriar [2 ]
Soroush, Mohammad Reza [2 ]
Shamsara, Mehdi [3 ]
Naeli, Parisa [4 ]
Najafi, Ali [5 ]
Korsching, Eberhard [6 ]
Mowla, Seyed Javad [4 ]
机构
[1] Shahid Bahonar Univ Kerman, Fac Sci, Dept Biol, Kerman, Iran
[2] JMERC, Tehran, Iran
[3] Natl Inst Genet Engn & Biotechnol, Tehran, Iran
[4] Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran
[5] Baqiyatallah Univ Med Sci, Mol Biol Res Ctr, Tehran, Iran
[6] Univ Munster, Univ Hosp Munster, Inst Bioinformat, Munster, Germany
关键词
TIME PCR DATA; GENE-EXPRESSION; SKIN-LESIONS; MESENCHYMAL TRANSITION; WARTIME EXPOSURE; CANCER; LUNG; QUANTIFICATION; IDENTIFICATION; COMPLICATIONS;
D O I
10.1371/journal.pone.0194530
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Sulfur mustard is a vesicant chemical warfare agent, which has been used during Iraq-Iran war. Many veterans and civilians still suffer from long-term complications of sulfur mustard exposure, especially in their lung. Although the lung lesions of these patients are similar to Chronic Obstructive Pulmonary Disease (COPD), there are some differences due to different etiology and clinical care. Less is known on the molecular mechanism of sulfur mustard patients and specific treatment options. microRNAs are master regulators of many biological pathways and proofed to be stable surrogate markers in body fluids. Based on that micro RNA expression for serum samples of sulfur mustard patients were examined, to establish specific microRNA patterns as a basis for diagnostic use and insight into affected molecular pathways. Patients were categorized based on their long-term complications into three groups and microRNA serum levels were measured. The differentially regulated microRNAs and their corresponding gene targets were identified. Cell cycle arrest, ageing and TGFbeta signaling pathways showed up to be the most deregulated pathways. The candidate microRNA miR-143-3p could be validated on all individual patients. In a ROC analysis miR-143-3p turned out to be a suitable diagnostic biomarker in the mild and severe categories of patients. Further microRNAs which might own a link to the biology of the sulfur mustard patients are miR-365a-3p, miR-200a-3p, miR-663a. miR-148a-3p, which showed up only in a validation study, might be linked to the airway complications of the sulfur mustard patients. All the other candidate microRNAs do not directly link to COPD phenotype or lung complications. In summary the microRNA screening study characterizes several molecular differences in-between the clinical categories of the sulfur mustard exposure groups and established some useful microRNA biomarkers. qPCR raw data is available via the Gene Expression Omnibus https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110797.
引用
收藏
页数:19
相关论文
共 57 条
[1]   Control of small inhibitory RNA levels and RNA interference by doxycycline induced activation of a minimal RNA polymerase III promoter [J].
Amar, L ;
Desclaux, M ;
Faucon-Biguet, N ;
Mallet, J ;
Vogel, R .
NUCLEIC ACIDS RESEARCH, 2006, 34 (05)
[2]  
[Anonymous], 1992, Statistical Science, DOI [10.1214/ss/1177011137, DOI 10.1214/SS/1177011137]
[3]   Comparison of early and late toxic effects of sulfur mustard in Iranian veterans [J].
Balali-Mood, Mahdi ;
Hefazi, Mehrdad .
BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY, 2006, 99 (04) :273-282
[4]  
Behravan E, 2013, J RES MED SCI, V18, P239
[5]   Comparisons of Methods for Multiple Hypothesis Testing in Neuropsychological Research [J].
Blakesley, Richard E. ;
Mazumdar, Sati ;
Dew, Mary Amanda ;
Houck, Patricia R. ;
Tang, Gong ;
Reynolds, Charles F., III ;
Butters, Meryl A. .
NEUROPSYCHOLOGY, 2009, 23 (02) :255-264
[6]   MiRNA Profile Associated with Replicative Senescence, Extended Cell Culture, and Ectopic Telomerase Expression in Human Foreskin Fibroblasts [J].
Bonifacio, Laura N. ;
Jarstfer, Michael B. .
PLOS ONE, 2010, 5 (09) :1-8
[7]   Permutation - based statistical tests for multiple hypotheses [J].
Camargo, Anyela ;
Azuaje, Francisco ;
Wang, Haiying ;
Zheng, Huiru .
SOURCE CODE FOR BIOLOGY AND MEDICINE, 2008, 3 (01)
[8]   Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases [J].
Chen, Xi ;
Ba, Yi ;
Ma, Lijia ;
Cai, Xing ;
Yin, Yuan ;
Wang, Kehui ;
Guo, Jigang ;
Zhang, Yujing ;
Chen, Jiangning ;
Guo, Xing ;
Li, Qibin ;
Li, Xiaoying ;
Wang, Wenjing ;
Zhang, Yan ;
Wang, Jin ;
Jiang, Xueyuan ;
Xiang, Yang ;
Xu, Chen ;
Zheng, Pingping ;
Zhang, Juanbin ;
Li, Ruiqiang ;
Zhang, Hongjie ;
Shang, Xiaobin ;
Gong, Ting ;
Ning, Guang ;
Wang, Jun ;
Zen, Ke ;
Zhang, Junfeng ;
Zhang, Chen-Yu .
CELL RESEARCH, 2008, 18 (10) :997-1006
[9]   miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database [J].
Chou, Chih-Hung ;
Chang, Nai-Wen ;
Shrestha, Sirjana ;
Hsu, Sheng-Da ;
Lin, Yu-Ling ;
Lee, Wei-Hsiang ;
Yang, Chi-Dung ;
Hong, Hsiao-Chin ;
Wei, Ting-Yen ;
Tu, Siang-Jyun ;
Tsai, Tzi-Ren ;
Ho, Shu-Yi ;
Jian, Ting-Yan ;
Wu, Hsin-Yi ;
Chen, Pin-Rong ;
Lin, Nai-Chieh ;
Huang, Hsin-Tzu ;
Yang, Tzu-Ling ;
Pai, Chung-Yuan ;
Tai, Chun-San ;
Chen, Wen-Liang ;
Huang, Chia-Yen ;
Liu, Chun-Chi ;
Weng, Shun-Long ;
Liao, Kuang-Wen ;
Hsu, Wen-Lian ;
Huang, Hsien-Da .
NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D239-D247
[10]   Dynamic epigenetic regulation of the microRNA-200 family mediates epithelial and mesenchymal transitions in human tumorigenesis [J].
Davalos, V. ;
Moutinho, C. ;
Villanueva, A. ;
Boque, R. ;
Silva, P. ;
Carneiro, F. ;
Esteller, M. .
ONCOGENE, 2012, 31 (16) :2062-2074