Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

被引：9

作者：

Babbitt, Patricia C. ^{[1
,2
]}

Bagos, Pantelis G. ^{[3
]}

Bairoch, Amos ^{[4
]}

Bateman, Alex ^{[5
]}

Chatonnet, Arnaud ^{[6
]}

Chen, Mark Jinan ^{[7
,8
]}

Craik, David J. ^{[9
]}

Finn, Robert D. ^{[5
]}

Gloriam, David ^{[10
]}

Haft, Daniel H. ^{[11
]}

Henrissat, Bernard ^{[12
,13
]}

Holliday, Gemma L. ^{[1
,2
]}

Isberg, Vignir ^{[10
,14
]}

Kaas, Quentin ^{[9
]}

Landsman, David ^{[11
]}

Lenfant, Nicolas ^{[6
]}

Manning, Gerard ^{[7
,8
]}

Nagano, Nozomi ^{[15
]}

Srinivasan, Narayanaswamy ^{[16
]}

O'Donovan, Claire ^{[5
]}

Pruitt, Kim D. ^{[11
]}

Sowdhamini, Ramanathan ^{[17
]}

Rawlings, Neil D. ^{[5
]}

Saier, Milton H., Jr. ^{[18
]}

Sharman, Joanna L. ^{[19
]}

Spedding, Michael ^{[20
]}

Tsirigos, Konstantinos D. ^{[21
]}

Vastermark, Ake ^{[18
]}

Vriend, Gerrit ^{[14
]}

机构：

[1] Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA

[2] Univ Calif San Francisco, Calif Inst Quantitat Biosci, San Francisco, CA 94158 USA

[3] Univ Thessaly, Dept Comp Sci & Biomed Informat, Lamia 35100, Greece

[4] CMU, SIB, CH-1211 Geneva 4, Switzerland

[5] EBI, EMBL, Cambridge CB10 1SD, England

[6] INRA, UMR Dynam Musculaire & Metab 866, F-34000 Montpellier, France

[7] Salk Inst Biol Studies, Razavi Newman Ctr Bioinformat, La Jolla, CA 92037 USA

[8] Genentech Inc, Bioinformat & Computat Biol, San Francisco, CA 94080 USA

[9] Univ Queensland, Queensland Biosci Precinct, Brisbane, Qld 4072, Australia

[10] Univ Copenhagen, Dept Drug Design & Pharmacol, DK-2100 Copenhagen O, Denmark

[11] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA

[12] Aix Marseille Univ, CNRS, Architecture & Fonct Macromol Biol, F-13288 Marseille, France

[13] King Abdulaziz Univ, Dept Biol Sci, Jeddah 21413, Saudi Arabia

[14] Raboudumc, CMBI, NL-6525 GA Nijmegen, Netherlands

[15] Natl Inst Adv Ind Sci & Technol, Biotechnol Res Inst Drug Discovery, Koto Ku, Tokyo 1350064, Japan

[16] Indian Inst Sci, Mol Biophys Unit, Bangalore 560012, Karnataka, India

[17] TIFR, Natl Ctr Biol Sci, Bangalore 560065, Karnataka, India

[18] Univ Calif San Diego, Dept Mol Biol, La Jolla, CA 92093 USA

[19] Univ Edinburgh, Ctr Integrat Physiol, Edinburgh EH8 9XD, Midlothian, Scotland

[20] Spedding Res Solut, F-78110 Le Vesinet, France

[21] Stockholm Univ, Swedish E Sci Res Ctr, Dept Biochem & Biophys, Sci Life Lab, S-17121 Solna, Sweden

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2015年

关键词：

DATABASE;

D O I：

10.1093/database/bav063

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

During 11-12 August 2014, a Protein Bioinformatics and Community Resources Retreat was held at the Wellcome Trust Genome Campus in Hinxton, UK. This meeting brought together the principal investigators of several specialized protein resources (such as CAZy, TCDB and MEROPS) as well as those from protein databases from the large Bioinformatics centres (including UniProt and RefSeq). The retreat was divided into five sessions: (1) key challenges, (2) the databases represented, (3) best practices for maintenance and curation, (4) information flow to and from large data centers and (5) communication and funding. An important outcome of this meeting was the creation of a Specialist Protein Resource Network that we believe will improve coordination of the activities of its member resources. We invite further protein database resources to join the network and continue the dialogue.

引用

页数：5

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