Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

被引：57
作者：
Sessegolo, Camille [1 ]
Burlet, Nelly [1 ]
Haudry, Annabelle [1 ]
机构：
[1] Univ Claude Bernard Lyon 1, Univ Lyon, Lab Biometrie & Biol Evolut, CNRS,UMR5558, F-69100 Villeurbanne, France
来源：
BIOLOGY LETTERS | 2016年 / 12卷 / 08期
关键词：
genome size; phylogenetic inertia; transposable elements; flies; JUNK DNA; EVOLUTION; ACCUMULATION;
D O I：
10.1098/rsbl.2016.0407
中图分类号：
Q [生物科学];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
While the evolutionary mechanisms driving eukaryote genome size evolution are still debated, repeated element content appears to be crucial. Here, we reconstructed the phylogeny and identified repeats in the genome of 26 Drosophila exhibiting a twofold variation in genome size. The content in transposable elements (TEs) is highly correlated to genome size evolution among these closely related species. We detected a strong phylogenetic signal on the evolution of both genome size and TE content, and a genome contraction in the Drosophila melanogaster subgroup.
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共 45 条
[31]   Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions [J].
Zhu, Ting ;
Xu, Ping-Zhen ;
Liu, Jiang-Peng ;
Peng, Sheng ;
Mo, Xin-Chun ;
Gao, Li-Zhi .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 70 :348-361
[32]   Differentially Expressed Genes Associated with Body Size Changes and Transposable Element Insertions between Caenorhabditis elegans and Its Sister Species, Caenorhabditis inopinata [J].
Kawahara, Kazuma ;
Inada, Taruho ;
Tanaka, Ryusei ;
Dayi, Mehmet ;
Makino, Takashi ;
Maruyama, Shinichiro ;
Kikuchi, Taisei ;
Sugimoto, Asako ;
Kawata, Masakado .
GENOME BIOLOGY AND EVOLUTION, 2023, 15 (04)
[33]   Hybridization and genome size evolution:: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species [J].
Baack, EJ ;
Whitney, KD ;
Rieseberg, LH .
NEW PHYTOLOGIST, 2005, 167 (02) :623-630
[34]   Insights into the genome of the ‘Loco’ Concholepas concholepas (Gastropoda: Muricidae) from low-coverage short-read sequencing: genome size, ploidy, transposable elements, nuclear RNA gene operon, mitochondrial genome, and phylogenetic placement in the family Muricidae [J].
J. Antonio Baeza ;
M. Teresa González ;
Julia D. Sigwart ;
Carola Greve ;
Stacy Pirro .
BMC Genomics, 25
[35]   Insights into the genome of the 'Loco' Concholepas concholepas (Gastropoda: Muricidae) from low-coverage short-read sequencing: genome size, ploidy, transposable elements, nuclear RNA gene operon, mitochondrial genome, and phylogenetic placement in the family Muricidae [J].
Baeza, J. Antonio ;
Gonzalez, M. Teresa ;
Sigwart, Julia D. ;
Greve, Carola ;
Pirro, Stacy .
BMC GENOMICS, 2024, 25 (01)
[36]   Karyotype and genome size comparative analyses among six species of the oilseed-bearing genus Jatropha (Euphorbiaceae) [J].
Marinho, Anne C. T. A. ;
Vasconcelos, Santelmo ;
Vasconcelos, Emanuelle V. ;
Marques, Daniela A. ;
Benko-Iseppon, Ana Maria ;
Brasileiro-Vidal, Ana Christina .
GENETICS AND MOLECULAR BIOLOGY, 2018, 41 (02) :442-449
[37]   Use of a cytogenetic whole-genome comparison to resolve phylogenetic relationships among three species: Implications for mammalian systematics and conservation biology [J].
Yu, Hon-Tsen ;
Ma, Gwo-Chin ;
Lee, Dong-Jay ;
Chin, Shih-Chien ;
Chen, Ting-Li ;
Tsao, Hsien-Shao ;
Lin, Wen-Hsiang ;
Wu, Sheng-Hai ;
Lin, Chyi-Chyang ;
Chen, Ming .
THERIOGENOLOGY, 2012, 77 (08) :1615-1623
[38]   p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species [J].
Iwamoto, M ;
Nagashima, H ;
Nagamine, T ;
Higo, H ;
Higo, K .
THEORETICAL AND APPLIED GENETICS, 1999, 98 (6-7) :853-861
[39]   p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species [J].
M. Iwamoto ;
H. Nagashima ;
T. Nagamine ;
H. Higo ;
K. Higo .
Theoretical and Applied Genetics, 1999, 98 :853-861
[40]   Continuous Morphological Variation Correlated with Genome Size Indicates Frequent Introgressive Hybridization among Diphasiastrum Species (Lycopodiaceae) in Central Europe [J].
Hanusova, Kristyna ;
Ekrt, Libor ;
Vit, Petr ;
Kolar, Filip ;
Urfus, Tomas .
PLOS ONE, 2014, 9 (06)
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