Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

被引:52
作者
Sessegolo, Camille [1 ]
Burlet, Nelly [1 ]
Haudry, Annabelle [1 ]
机构
[1] Univ Claude Bernard Lyon 1, Univ Lyon, Lab Biometrie & Biol Evolut, CNRS,UMR5558, F-69100 Villeurbanne, France
关键词
genome size; phylogenetic inertia; transposable elements; flies; JUNK DNA; EVOLUTION; ACCUMULATION;
D O I
10.1098/rsbl.2016.0407
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
While the evolutionary mechanisms driving eukaryote genome size evolution are still debated, repeated element content appears to be crucial. Here, we reconstructed the phylogeny and identified repeats in the genome of 26 Drosophila exhibiting a twofold variation in genome size. The content in transposable elements (TEs) is highly correlated to genome size evolution among these closely related species. We detected a strong phylogenetic signal on the evolution of both genome size and TE content, and a genome contraction in the Drosophila melanogaster subgroup.
引用
收藏
页数:4
相关论文
共 44 条
[21]   Genome size variation among sex types in dioecious and trioecious Caricaceae species [J].
Gschwend, Andrea R. ;
Wai, Ching Man ;
Zee, Francis ;
Arumuganathan, Aru K. ;
Ming, Ray .
EUPHYTICA, 2013, 189 (03) :461-469
[22]   Comparative analysis of mitochondrial genomes among four species of muscid flies (Diptera: Muscidae) and its phylogenetic implications [J].
Ren, Lipin ;
Shang, Yanjie ;
Yang, Li ;
Shen, Xiao ;
Chen, Wei ;
Wang, Yong ;
Cai, Jifeng ;
Guo, Yadong .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2019, 127 :357-364
[23]   The DNA methylation level against the background of the genome size and theterochromatin content in some species of the genus Secale L [J].
Kalinka, Anna ;
Achrem, Magdalena ;
Poter, Paulina .
PEERJ, 2017, 5
[24]   Genome size variation among and within Ophiopogoneae species by flow cytometric analysis [J].
Guangyan Wang ;
Ying Meng ;
Yongping Yang .
Brazilian Journal of Botany, 2017, 40 :529-537
[25]   Genome size variation among sex types in dioecious and trioecious Caricaceae species [J].
Andrea R. Gschwend ;
Ching Man Wai ;
Francis Zee ;
Aru K. Arumuganathan ;
Ray Ming .
Euphytica, 2013, 189 :461-469
[26]   PHYLOGENETIC PLACEMENT, GENOME SIZE, AND GC CONTENT OF THE LIQUID-HYDROCARBON-PRODUCING GREEN MICROALGA BOTRYOCOCCUS BRAUNII STRAIN BERKELEY (SHOWA) (CHLOROPHYTA) [J].
Weiss, Taylor L. ;
Johnston, J. Spencer ;
Fujisawa, Kazuhiro ;
Sumimoto, Koremitsu ;
Okada, Shigeru ;
Chappell, Joe ;
Devarenne, Timothy P. .
JOURNAL OF PHYCOLOGY, 2010, 46 (03) :534-540
[27]   Genome size variation in Melipona species (Hymenoptera: Apidae) and sub-grouping by their DNA content [J].
Tavares, Mara Garcia ;
Carvalho, Carlos Roberto ;
Ferrari Soares, Fernanda Aparecida .
APIDOLOGIE, 2010, 41 (06) :636-642
[28]   Complete chloroplast genome sequences of Myristicaceae species with the comparative chloroplast genomics and phylogenetic relationships among them [J].
Mao, Changli ;
Zhang, Fengliang ;
Li, Xiaoqin ;
Yang, Tian ;
Zhao, Qi ;
Wu, Yu .
PLOS ONE, 2023, 18 (03)
[29]   Genome Size Variation among and within Camellia Species by Using Flow Cytometric Analysis [J].
Huang, Hui ;
Tong, Yan ;
Zhang, Qun-Jie ;
Gao, Li-Zhi .
PLOS ONE, 2013, 8 (05)
[30]   Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions [J].
Zhu, Ting ;
Xu, Ping-Zhen ;
Liu, Jiang-Peng ;
Peng, Sheng ;
Mo, Xin-Chun ;
Gao, Li-Zhi .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 70 :348-361