Identification of a Prognostic Model Based on Immune Cell Signatures in Clear Cell Renal Cell Carcinoma

被引:2
作者
Shi, Xuezhong [1 ]
Niu, Yali [1 ]
Yang, Yongli [1 ]
Wang, Nana [1 ]
Yuan, Mengyang [1 ]
Yang, Chaojun [1 ]
Dong, Ani [1 ]
Zhu, Huili [1 ]
Jia, Xiaocan [1 ]
机构
[1] Zhengzhou Univ, Coll Publ Hlth, Dept Epidemiol & Biostat, Zhengzhou 450001, Henan, Peoples R China
关键词
T-CELLS; TGF-BETA; VALIDATION; CANCER;
D O I
10.1155/2022/1727575
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Background. Accumulating evidence substantiated that the immune cells were intricately intertwined with the prognosis and therapy of clear cell renal cell carcinoma (ccRCC). We aimed to construct an immune cell signatures (ICS) score model to predict the prognosis of ccRCC patients and furnish guidance for finding appropriate treatment strategies. Methods. Based on The Cancer Genome Atlas (TCGA) database, the normalized enrichment score (NES) of 184 ICSf was calculated using single-sample gene set enrichment analysis (ssGSEA). An ICS score model was generated in light of univariate Cox regression and Least absolute shrinkage and selection operator (Lasso)-Cox regression, which was independently validated in ArrayExpress database. In addition, we appraised the predictive power of the model via Kaplan-Meier (K-M) curves and time-dependent receiver operating characteristic (ROC) curves. Eventually, immune infiltration, genomic alterations and immunotherapy were analyzed between high and low ICS score groups. Results. Initially, we screened 11 ICS with prognostic impact based on 515 ccRCC patients. K-M curves presented that the high ICS score group experienced a poorer prognosis (P < 0.001). In parallel, ROC curves revealed a satisfactory reliability of model to predict individual survival at 1, 3, and 5 years, with area under the curves (AUCs) of 0.744, 0.713, and 0.742, respectively. In addition, we revealed that the high ICS score group was characterized by increased infiltration of immune cells, strengthened BAP1 mutation frequency, and enhanced expression of immune checkpoint genes. Conclusion. The ICS score model has higher predictive power for patients' prognosis and can instruct ccRCC patients in seeking suitable treatment.
引用
收藏
页数:16
相关论文
共 50 条
[21]   Construction and validation of a survival prognostic model for clear cell renal cell carcinoma [J].
Li, Chen-Li ;
Jiang, Yu-Qian ;
Pan, Wei ;
Yang, Yan-Li .
CLINICAL NEPHROLOGY, 2025, 103 (03) :200-212
[22]   Establishment and validation of a polygene prognostic model for clear cell renal cell carcinoma [J].
Gan, Kai ;
Zhang, Keying ;
Li, Yu ;
Zhao, Xiaolong ;
Li, Hongji ;
Xu, Chao ;
Liu, Shaojie ;
Zhang, Chao ;
Han, Donghui ;
Wen, Weihong ;
Qin, Weijun .
FRONTIERS IN GENETICS, 2022, 13
[23]   Assessment for prognostic value of differentially expressed genes in immune microenvironment of clear cell renal cell carcinoma [J].
Yin, Xiaoxue ;
Zhang, Xingming ;
Liu, Zhenhua ;
Sun, Guangxi ;
Zhu, Xudong ;
Zhang, Haoran ;
Zhu, Sha ;
Zhao, Jinge ;
Chen, Junru ;
Shen, Pengfei ;
Wang, Jia ;
Chen, Ni ;
Zhou, Qiao ;
Zeng, Hao .
AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH, 2020, 12 (09) :5416-5432
[24]   Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures [J].
Senbabaoglu, Yasin ;
Gejman, Ron S. ;
Winer, Andrew G. ;
Liu, Ming ;
Van Allen, Eliezer M. ;
de Velasco, Guillermo ;
Miao, Diana ;
Ostrovnaya, Irina ;
Drill, Esther ;
Luna, Augustin ;
Weinhold, Nils ;
Lee, William ;
Manley, Brandon J. ;
Khalil, Danny N. ;
Kaffenberger, Samuel D. ;
Chen, Yingbei ;
Danilova, Ludmila ;
Voss, Martin H. ;
Coleman, Jonathan A. ;
Russo, Paul ;
Reuter, Victor E. ;
Chan, Timothy A. ;
Cheng, Emily H. ;
Scheinberg, David A. ;
Li, Ming O. ;
Choueiri, Toni K. ;
Hsieh, James J. ;
Sander, Chris ;
Hakimi, A. Ari .
GENOME BIOLOGY, 2016, 17
[25]   Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma [J].
Ren, Shiqi ;
Wang, Wei ;
Shen, Hanyu ;
Zhang, Chenlin ;
Hao, Haiyan ;
Sun, Mengjing ;
Wang, Yingjing ;
Zhang, Xiaojing ;
Lu, Bing ;
Chen, Chen ;
Wang, Ziheng .
FRONTIERS IN ONCOLOGY, 2020, 10
[26]   Identification of ALDOB as a novel prognostic biomarker in kidney clear cell renal cell carcinoma [J].
Li, Xiao-yang ;
Xu, You-yao ;
Wu, Sen-yan ;
Zeng, Xi -xi ;
Zhou, Yan ;
Cheng, Guo-bin .
HELIYON, 2024, 10 (08)
[27]   Identification of an Autophagy-Related Prognostic Signature for Clear Cell Renal Cell Carcinoma [J].
Chen, Mei ;
Zhang, Shufang ;
Nie, Zhenyu ;
Wen, Xiaohong ;
Gao, Yuanhui .
FRONTIERS IN ONCOLOGY, 2020, 10
[28]   Construction of an immune-related prognostic model by exploring the tumor microenvironment of clear cell renal cell carcinoma [J].
He, Jia ;
Zhong, Yun ;
Sun, Yanli ;
Xie, Chao ;
Yu, Tianqiang .
ANALYTICAL BIOCHEMISTRY, 2022, 643
[29]   Development and validation of a PBRM1-associated immune prognostic model for clear cell renal cell carcinoma [J].
Chen, Jiayi ;
Yao, Chunlin ;
Qiao, Nan ;
Ge, Yangyang ;
Li, Jianhua ;
Lin, Yun ;
Yao, Shanglong .
CANCER MEDICINE, 2021, 10 (19) :6590-6609
[30]   Identification of molecular subtypes and a prognostic risk model based on mitochondrial dynamic related genes in clear cell renal cell carcinoma [J].
Yang, Kaibo ;
Yang, Kun ;
Lei, Zitong ;
Wu, Kunjin ;
Li, Jing ;
Peng, Qiuting ;
Liu, Chang ;
Qu, Kai ;
Lin, Ting .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2025, 767