VEGFA rSNPs, transcriptional factor binding sites and human disease

被引:6
作者
Buroker, Norman E. [1 ]
机构
[1] Univ Washington, Dept Pediat, Seattle, WA 98195 USA
关键词
VEGFA; rSNP; TFBS; Human disease; ENDOTHELIAL GROWTH-FACTOR; GENOME-WIDE ASSOCIATION; OPEN-ACCESS DATABASE; FACTOR GENE; REGULATORY POLYMORPHISMS; FUNCTIONAL IMPLICATIONS; ANDROGEN RECEPTOR; IDENTIFICATION; COMPLICATIONS; MECHANISMS;
D O I
10.1007/s12576-013-0293-4
中图分类号
Q4 [生理学];
学科分类号
071003 ;
摘要
Three regulatory SNPs (rSNPs) in the promoter region of the vascular endothelial growth factor-A (VEGFA) gene have been significantly associated with several human diseases or conditions. The rSNP alleles alter the DNA landscape for potential transcriptional factors to attach, resulting in changes in transcriptional factor binding sites (TFBS). These TFBS changes are examined with respect to the human diseases which have been found to be significantly associated with the rSNPs.
引用
收藏
页码:73 / 76
页数:4
相关论文
共 36 条
[21]   Disease Risk Links To Gene Regulation [J].
Pennisi, Elizabeth .
SCIENCE, 2011, 332 (6033) :1031-1031
[22]  
Prokunina Ludmila, 2004, Expert Reviews in Molecular Medicine, V6, P1, DOI 10.1017/S1462399404007690
[23]  
Rueda B, 2006, J RHEUMATOL, V33, P69
[24]   Analysis of vascular endothelial growth factor (VEGF) functional variants in rheumatoid arthritis [J].
Rueda, B ;
González-Gay, MA ;
López-Nevot, MA ;
García, A ;
Fernández-Arquero, M ;
Balsa, A ;
Pablos, JL ;
Pascual-Salcedo, D ;
de la Concha, EG ;
González-Escribano, MF ;
Martín, J .
HUMAN IMMUNOLOGY, 2005, 66 (08) :864-868
[25]  
Rueda B, 2005, J RHEUMATOL, V32, P1737
[26]   Pharmacogenomics of the RNA World: Structural RNA Polymorphisms in Drug Therapy [J].
Sadee, W. ;
Wang, D. ;
Papp, A. C. ;
Pinsonneault, J. K. ;
Smith, R. M. ;
Moyer, R. A. ;
Johnson, A. D. .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 2011, 89 (03) :355-365
[27]   JASPAR:: an open-access database for eukaryotic transcription factor binding profiles [J].
Sandelin, A ;
Alkema, W ;
Engström, P ;
Wasserman, WW ;
Lenhard, B .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D91-D94
[28]   ConSite: web-based prediction of regulatory elements using cross-species comparison [J].
Sandelin, A ;
Wasserman, WW ;
Lenhard, B .
NUCLEIC ACIDS RESEARCH, 2004, 32 :W249-W252
[29]   AP1 binding site is another target of FGF2 regulation of bone sialoprotein gene transcription [J].
Takai, Hideki ;
Araki, Shouta ;
Mezawa, Masaru ;
Kim, Dong-Soon ;
Li, Xinyue ;
Yang, Li ;
Li, Zhengyang ;
Wang, Zhitao ;
Nakayama, Youhei ;
Ogata, Yorimasa .
GENE, 2008, 410 (01) :97-104
[30]   Identification of polymorphic antioxidant response elements in the human genome [J].
Wang, Xuting ;
Tomso, Daniel J. ;
Chorley, Brian N. ;
Cho, Hye-Youn ;
Cheung, Vivian G. ;
Kleeberger, Steven R. ;
Bell, Douglas A. .
HUMAN MOLECULAR GENETICS, 2007, 16 (10) :1188-1200