Discrimination between genetically identical peony roots from different regions of origin based on 1H-nuclear magnetic resonance spectroscopy-based metabolomics: determination of the geographical origins and estimation of the mixing proportions of blended samples

被引:6
作者
Um, Jung A. [1 ]
Choi, Young-Geun [4 ]
Lee, Dong-Kyu [1 ]
Lee, Yun Sun [2 ,3 ]
Lim, Chang Ju [1 ]
Youn, Young A. [5 ]
Lee, Hwa Dong [6 ]
Cho, Hi Jae [6 ]
Park, Jeong Hill [1 ]
Seo, Young Bae [7 ]
Kuo, Hsun-chih [8 ]
Lim, Johan [4 ]
Yang, Tae-Jin [2 ,3 ]
Kwon, Sung Won [1 ]
Lee, Jeongmi [5 ]
机构
[1] Seoul Natl Univ, Coll Pharm, Seoul 151742, South Korea
[2] Seoul Natl Univ, Plant Genom & Breeding Inst, Dept Plant Sci, Coll Agr & Life Sci, Seoul 151921, South Korea
[3] Seoul Natl Univ, Coll Agr & Life Sci, Res Inst Agr & Life Sci, Seoul 151921, South Korea
[4] Seoul Natl Univ, Dept Stat, Seoul 151742, South Korea
[5] Sungkyunkwan Univ, Sch Pharm, Suwon 440746, South Korea
[6] Korea Promot Inst Tradit Med Ind, Gyongsan 712260, South Korea
[7] Daejeon Univ, Dept Herbal, Coll Oriental Med, Taejon 300716, South Korea
[8] Natl Chengchi Univ, Dept Stat, Taipei 11605, Taiwan
基金
新加坡国家研究基金会;
关键词
Nuclear magnetic resonance spectroscopy; Metabolomics; Geographical origin; Chloroplast intergenic space analysis; High-resolution melting analysis; Constrained least squares method; NMR-BASED METABOLOMICS; QUANTITATIVE-ANALYSIS; PAEONIFLORIN; CONSTITUENTS; POLYMORPHISM; EXTRACT; PLANTS; GENE; SOIL; L;
D O I
10.1007/s00216-013-7182-9
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Sixty peony root training samples of the same age were collected from various regions in Korea and China, and their genetic diversity was investigated for 23 chloroplast intergenic space regions. All samples were genetically indistinguishable, indicating that the DNA-based techniques employed were not appropriate for determining the samples' regions of origin. In contrast, H-1-nuclear magnetic resonance (H-1-NMR) spectroscopy-based metabolomics coupled with multivariate statistical analysis revealed a clear difference between the metabolic profiles of the Korean and Chinese samples. Orthogonal projections on the latent structure-discrimination analysis allowed the identification of potential metabolite markers, including gamma-aminobutyric acid, arginine, alanine, paeoniflorin, and albiflorin, that could be useful for classifying the samples' regions of origin. The validity of the discrimination model was tested using the response permutation test and blind prediction test for internal and external validations, respectively. Metabolomic data of 21 blended samples consisting of Korean and Chinese samples mixed at various proportions were also acquired by H-1-NMR analysis. After data preprocessing which was designed to eliminate uncontrolled deviations in the spectral data between the testing and training sets, a new statistical procedure for estimating the mixing proportions of blended samples was established using the constrained least squares method for the first time. The predictive procedure exhibited relatively good predictability (adjusted R (2) = 0.7669), and thus has the potential to be used in the quality control of peony root by providing correct indications for a sample's geographical origins.
引用
收藏
页码:7523 / 7534
页数:12
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