A Hybrid PSO-GSA Strategy for High-dimensional Optimization and Microarray Data Clustering

被引:0
作者
Sun, Shiquan [1 ]
Peng, Qinke [1 ]
机构
[1] Xi An Jiao Tong Univ, Sch Elect & Informat Engn, Syst Engn Inst, Xian 710049, Peoples R China
来源
2014 IEEE INTERNATIONAL CONFERENCE ON INFORMATION AND AUTOMATION (ICIA) | 2014年
关键词
local search; global search; high dimensional; clustering; microarray data; PARTICLE SWARM OPTIMIZATION; GENETIC ALGORITHM; COLONY;
D O I
暂无
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
High-dimensional data analysis and its great chances of overfitting result in great challenges for constructing efficient models in practical applications. To overcome these problems swarm intelligence algorithms can be utilized. However, the balance between global and local search throughout the course of a run is critical to the success of an intelligence optimization algorithm. Moreover, almost all the available algorithms are still having issues like premature convergence to local optimum and slow convergence rate, especially in high-dimensional space. As motivated above, a new hybrid optimization algorithm integrating particle swarm optimization(PSO) with gravitational search algorithm(GSA) is presented (denoted as PSOGSA). Based on the analysis of the compensatory advantages of the PSO and the GSA, in this paper, we integrate the ability of exploitation in PSO with the ability of exploration in GSA to update velocity equations. To update position equations a mobility factor is used which is guided by diversity of population to improve the final accuracy and the convergence speed of the PSOGSA. We also apply proposed algorithm to the cluster analysis of microarray data. Experiments are conducted on six benchmark test functions, four artificial data sets and three microarray data sets, and the results demonstrate that the proposed algorithm possess better robustness.
引用
收藏
页码:41 / 46
页数:6
相关论文
共 22 条
[1]   Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data [J].
Boutros, PC ;
Okey, AB .
BRIEFINGS IN BIOINFORMATICS, 2005, 6 (04) :331-343
[2]   The particle swarm - Explosion, stability, and convergence in a multidimensional complex space [J].
Clerc, M ;
Kennedy, J .
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2002, 6 (01) :58-73
[3]   Fuzzy C-means method for clustering microarray data [J].
Dembélé, D ;
Kastner, P .
BIOINFORMATICS, 2003, 19 (08) :973-980
[4]   Ant system: Optimization by a colony of cooperating agents [J].
Dorigo, M ;
Maniezzo, V ;
Colorni, A .
IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART B-CYBERNETICS, 1996, 26 (01) :29-41
[5]  
Eberhart RC, 2001, IEEE C EVOL COMPUTAT, P81, DOI 10.1109/CEC.2001.934374
[6]  
Holden Nicholas, 2008, Journal of Artificial Evolution & Applications, DOI 10.1155/2008/316145
[7]   ADAPTATION IN NATURAL AND ARTIFICIAL SYSTEMS - HOLLAND,JH [J].
HOOKER, CA .
PHILOSOPHICAL PSYCHOLOGY, 1995, 8 (03) :287-299
[8]   PSO-SFDD: Defense against SYN flooding DoS attacks by employing PSO algorithm [J].
Jamali, Shahram ;
Shaker, Gholam .
COMPUTERS & MATHEMATICS WITH APPLICATIONS, 2012, 63 (01) :214-221
[9]   Generalized particle swarm optimization algorithm - Theoretical and empirical analysis with application in fault detection [J].
Kanovic, Zeljko ;
Rapaic, Milan R. ;
Jelicic, Zoran D. .
APPLIED MATHEMATICS AND COMPUTATION, 2011, 217 (24) :10175-10186
[10]   A hybrid genetic algorithm and particle swarm optimization for multimodal functions [J].
Kao, Yi-Tung ;
Zahara, Erwie .
APPLIED SOFT COMPUTING, 2008, 8 (02) :849-857