Automatic extraction of DNA profiles in polyacrilamide gel electrophoresis images

被引:0
|
作者
Silva-Mata, F
Talavera-Bustamante, I
González-Gazapo, R
Hernández-González, N
Palau-Infantel, JR
Santiesteban-Vidal, M
机构
关键词
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In this paper is presented a method for the automatic DNA spots classification and extraction of profiles associated in DNA polyacrilamide gel electrophoresis based on image processing. A software which implements this method was developed, composed by four modules: Digital image acquisition, image preprocessing, feature extraction and classification, and DNA profile extraction. The use of different types of algorithms as: C4.5 Decision Trees, Support Vector Machines and Leader Algorithm are needed to resolve all the tasks. The experimental results show that this method has a very nice computational behavior and effectiveness, and provide a very useful tool to decrease the time and increase the quality of the specialist responses.
引用
收藏
页码:242 / 251
页数:10
相关论文
共 50 条
  • [41] Automatic segmentation of DNA bands in one dimensional gel images produced by hybridizing techniques
    Akbari, A
    Albregtsen, F
    PROCEEDINGS OF THE 26TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-7, 2004, 26 : 2852 - 2855
  • [42] POLYACRYLAMIDE-GEL ELECTROPHORESIS PROFILES OF URINARY PROTEIN
    JUREIDINI, KF
    ZIMMERMAN, B
    AUSTRALIAN AND NEW ZEALAND JOURNAL OF MEDICINE, 1978, 8 (02): : 231 - 231
  • [43] AUTOMATIC APPARATUS FOR PRAEPARATIVE DISC ELECTROPHORESIS IN POLYACRYLAMID GEL
    STRAUCH, L
    ZEITSCHRIFT FUR ANALYTISCHE CHEMIE FRESENIUS, 1968, 243 (DEC): : 510 - &
  • [44] AUTOMATIC FOREGROUND EXTRACTION FOR IMAGES AND VIDEOS
    Tang, Zhen
    Miao, Zhenjiang
    Wan, Yanli
    Li, Jia
    2010 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, 2010, : 2993 - 2996
  • [45] MEASUREMENT OF DNA LENGTH BY GEL-ELECTROPHORESIS
    SOUTHERN, EM
    ANALYTICAL BIOCHEMISTRY, 1979, 100 (02) : 319 - 323
  • [46] Theory of gel electrophoresis of DNA: Orientational effects
    Subbotin, AV
    Semenov, AN
    ELECTROPHORESIS, 1996, 17 (06) : 1018 - 1026
  • [47] PHOTOGRAPHIC QUANTITATION OF DNA IN GEL-ELECTROPHORESIS
    PRUNELL, A
    STRAUSS, F
    LEBLANC, B
    ANALYTICAL BIOCHEMISTRY, 1977, 78 (01) : 57 - 65
  • [48] Supramolecular gel electrophoresis of large DNA fragments
    Tazawa, Shohei
    Kobayashi, Kazuhiro
    Oyoshi, Takanori
    Yamanaka, Masamichi
    ELECTROPHORESIS, 2017, 38 (20) : 2662 - 2665
  • [49] SIMULATION OF MEGABASE DNA GEL ELECTROPHORESIS UNDERGOING
    DUKE, TAJ
    VIOVY, JL
    PHYSICAL REVIEW LETTERS, 1992, 68 (04) : 542 - 545
  • [50] GEL-ELECTROPHORESIS OF PROTEIN DNA COMPLEXES
    CROTHERS, DM
    NATURE, 1987, 325 (6103) : 464 - 465