Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment

被引:29
作者
Kirin, Mirna [1 ]
Chandra, Aman [2 ,3 ]
Charteris, David G. [2 ]
Hayward, Caroline [4 ]
Campbell, Susan [4 ]
Celap, Ivana [5 ]
Bencic, Goran [6 ]
Vatavuk, Zoran [6 ]
Kirac, Iva [7 ]
Richards, Allan J. [8 ,9 ]
Tenesa, Albert [4 ,10 ]
Snead, Martin P. [11 ]
Fleck, Brian W. [12 ]
Singh, Jaswinder [12 ]
Harsum, Steven [2 ]
MacLaren, Robert E. [2 ]
den Hollander, Anneke I. [13 ,14 ]
Dunlop, Malcolm G. [4 ]
Hoyng, Carel B. [13 ]
Wright, Alan F. [4 ]
Campbell, Harry [1 ]
Vitart, Veronique [4 ]
Mitry, Danny [1 ]
机构
[1] Univ Edinburgh, Ctr Populat Hlth Sci, Edinburgh EH8 9AG, Midlothian, Scotland
[2] Moorfields Eye Hosp, London EC1 V2PD, England
[3] UCL, Inst Ophthalmol, London EC1 V9EL, England
[4] Univ Edinburgh, IGMM, MRC Human Genet Unit, Edinburgh EH4 2XU, Midlothian, Scotland
[5] Univ Clin Hosp Sestre Milosrdnice, Inst Clin Chem, Zagreb 10000, Croatia
[6] Univ Clin Hosp Sestre Milosrdnice, Dept Ophthalmol, Zagreb 10000, Croatia
[7] Univ Clin Hosp Sestre Milosrdnice, Univ Hosp Tumours, Surg Oncol Dept, Zagreb 10000, Croatia
[8] Cambridge Univ NHS Fdn Trust, Cambridge CB2 0QQ, England
[9] Univ Cambridge, Dept Pathol, Cambridge CB2 1QP, England
[10] Univ Edinburgh, Roslin Inst, Edinburgh EH25 9RG, Midlothian, Scotland
[11] Cambridge Univ NHS Fdn Trust, Vitreoretinal Serv, Cambridge, England
[12] Princess Alexandra Eye Pavil, Edinburgh, Midlothian, Scotland
[13] Radboud Univ Nijmegen, Med Ctr, Dept Ophthalmol, NL-6500 HB Nijmegen, Netherlands
[14] Radboud Univ Nijmegen, Med Ctr, Dept Human Genet, NL-6500 HB Nijmegen, Netherlands
基金
英国医学研究理事会;
关键词
EPIDEMIOLOGIC CHARACTERISTICS; INDUCED APOPTOSIS; CERAMIDE; POPULATION; MUTATION; LOCI; MULTIPLE; MEDIATOR; ERROR; TIAM1;
D O I
10.1093/hmg/ddt169
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Rhegmatogenous retinal detachment (RRD) is an important cause of vision loss and can potentially lead to blindness. The underlying pathogenesis is complex and incompletely understood. We applied a two-stage genetic association discovery phase followed by a replication phase in a combined total of 2833 RRD cases and 7871 controls. The discovery phase involved a genome-wide association scan of 867 affected individuals and 1953 controls from Scotland, followed by genotyping and testing 4347 highest ranking or candidate single nucleotide polymorphisms (SNPs) in independent sets of cases (1000) and controls (2912) of Dutch and British origin. None of the SNPs selected reached a Bonferroni-corrected threshold for significance (P 1.27 10(7)). The strongest association, for rs12960119 (P 1.58 10(7)) located within an intron of the SS18 gene. Further testing was carried out in independent casecontrol series from London (846 cases) and Croatia (120 cases). The combined meta-analysis identified one association reaching genome-wide significance for rs267738 (OR 1.29, P 2.11 10(8)), a missense coding SNP and eQTL for CERS2 encoding the protein ceramide synthase 2. Several of the top signals showing suggestive significance in the combined meta-analysis encompassed genes with a documented role in cell adhesion or migration, including SS18, TIAM1, TSTA3 and LDB2, which warrant further investigation. This first genetic association study of RRD supports a polygenic component underlying RRD risk since 27.4 of the underlying RRD liability could be explained by the collective additive effects of the genotyped SNP from the discovery genome-wide scan.
引用
收藏
页码:3174 / 3185
页数:12
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