How broadly tuned olfactory receptors equally recognize their agonists. Human OR1G1 as a test case

被引:58
作者
Charlier, Landry [1 ]
Topin, Jeremie [1 ]
Ronin, Catherine [2 ]
Kim, Soo-Kyung [3 ]
Goddard, William A., III [3 ]
Efremov, Roman [4 ]
Golebiowski, Jerome [1 ]
机构
[1] Univ Nice Sophia Antipolis 7272, UMR CNRS, Inst Chim Nice, F-06108 Nice 2, France
[2] CNRS, GLM, Lab Neuroglycobiol, F-13402 Marseille, France
[3] CALTECH, Mat & Proc Simulat Ctr MC139 74, Pasadena, CA 91125 USA
[4] Russian Acad Sci, Shemyakin Ovchinnikov Inst Bioorgan Chem, Lab Biomol Modeling, Moscow 117997, Russia
关键词
Molecular dynamics; Free energy; Odorant; GPCR; Structure; ODORANT BINDING-PROTEIN; BETA(2)-ADRENERGIC RECEPTOR; MOLECULAR-BASIS; PREDICTION; MOUSE; SITE; PERCEPTION; COMPLEXES;
D O I
10.1007/s00018-012-1116-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The molecular features that dominate the binding mode of agonists by a broadly tuned olfactory receptor are analyzed through a joint approach combining cell biology, calcium imaging, and molecular modeling. The odorant/receptor affinities, estimated through statistics accrued during molecular dynamics simulations, are in accordance with the experimental ranking. Although in many systems receptors recognize their target through a network of oriented interactions, such as H-bonding, the binding by broadly tuned olfactory receptors is dominated by non-polar terms. We show how such a feature allows chemicals belonging to different chemical families to similarly activate the receptors through compensations of interactions within the binding site.
引用
收藏
页码:4205 / 4213
页数:9
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