Genomic epidemiological investigation of a Streptococcus suis outbreak in Guangxi, China, 2016

被引：21

作者：

Huang, Wenhua ^{[1
]}

Wang, Mingliu ^{[2
]}

Hao, Huaijie ^{[3
]}

Yang, Ruifu ^{[1
]}

Xie, Jijie ^{[4
]}

Su, Jinhong ^{[5
]}

Lin, Mei ^{[2
]}

Cui, Yujun ^{[1
]}

Jiang, Yongqiang ^{[1
]}

机构：

[1] Beijing Inst Microbiol & Epidemiol, State Key Lab Pathogen & Biosecur, Beijing, Peoples R China

[2] Guangxi Zhuang Autonomous Reg Ctr Dis Control & P, Nanning, Guangxi, Peoples R China

[3] Chinese Acad Sci, Inst Microbiol, CAS Key Lab Pathogen Microbiol & Immunol, Beijing, Peoples R China

[4] Jingxi Ctr Dis Control & Prevent, Jingxi, Guangxi, Peoples R China

[5] Hengxian Ctr Dis Control & Prevent, Hengxian, Guangxi, Peoples R China

来源：

INFECTION GENETICS AND EVOLUTION | 2019年 / 68卷

基金：

北京市自然科学基金; 中国国家自然科学基金;

关键词：

Streptococcus suis; Disease outbreaks; Whole genome sequencing; Phylogeny; China; PATHOGEN;

D O I：

10.1016/j.meegid.2018.12.023

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

In June 2016, a Streptococcus suis outbreak occurred in Guangxi, China. We determined the genetic characteristics of six clinically isolated strains by serotyping, PCR, and whole-genome sequencing, performing genome epidemiology analysis on these and 961 public available S. suis genomes. We also classified the first sequence type ST665 human case. Sporadic and outbreak cases were distinguished by whole-genome sequencing and phylogenomics. This approach could help to prevent and control S. suis epidemics in Guangxi and the wider region.

引用

页码：249 / 252

页数：4

共 15 条

[1] Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology [J].

Chen, Chen ;

Zhang, Wen ;

Zheng, Han ;

Lan, Ruiting ;

Wang, Haiyin ;

Du, Pengcheng ;

Bai, Xuemei ;

Ji, Shaobo ;

Meng, Qiong ;

Jin, Dong ;

Liu, Kai ;

Jing, Huaiqi ;

Ye, Changyun ;

Gao, George F. ;

Wang, Lei ;

Gottschalk, Marcelo ;

Xu, Jianguo .

JOURNAL OF CLINICAL MICROBIOLOGY, 2013, 51 (08) :2582-2591

[2] Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis [J].

Cui, Yujun ;

Yu, Chang ;

Yan, Yanfeng ;

Li, Dongfang ;

Li, Yanjun ;

Jombart, Thibaut ;

Weinert, Lucy A. ;

Wang, Zuyun ;

Guo, Zhaobiao ;

Xu, Lizhi ;

Zhang, Yujiang ;

Zheng, Hancheng ;

Qin, Nan ;

Xiao, Xiao ;

Wu, Mingshou ;

Wang, Xiaoyi ;

Zhou, Dongsheng ;

Qi, Zhizhen ;

Du, Zongmin ;

Wu, Honglong ;

Yang, Xianwei ;

Cao, Hongzhi ;

Wang, Hu ;

Wang, Jing ;

Yao, Shusen ;

Rakin, Alexander ;

Li, Yingrui ;

Falush, Daniel ;

Balloux, Francois ;

Achtman, Mark ;

Song, Yajun ;

Wang, Jun ;

Yang, Ruifu .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (02) :577-582

[3] Fast algorithms for large-scale genome alignment and comparison [J].

Delcher, AL ;

Phillippy, A ;

Carlton, J ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 2002, 30 (11) :2478-2483

[4] Bacterial Etiologies of Five Core Syndromes: Laboratory-Based Syndromic Surveillance Conducted in Guangxi, China [J].

Dong, Baiqing ;

Liang, Dabin ;

Lin, Mei ;

Wang, Mingliu ;

Zeng, Jun ;

Liao, Hezhuang ;

Zhou, Lingyun ;

Huang, Jun ;

Wei, Xiaolin ;

Zou, Guanyang ;

Jing, Huaiqi .

PLOS ONE, 2014, 9 (10)

[5] Detection of Multiple Parallel Transmission Outbreak of Streptococcus suis Human Infection by Use of Genome Epidemiology, China, 2005 [J].

Du, Pengcheng ;

Zheng, Han ;

Zhou, Jieping ;

Lan, Ruiting ;

Ye, Changyun ;

Jing, Huaiqi ;

Jin, Dong ;

Cui, Zhigang ;

Bai, Xuemei ;

Liang, Jianming ;

Liu, Jiantao ;

Xu, Lei ;

Zhang, Wen ;

Chen, Chen ;

Xu, Jianguo .

EMERGING INFECTIOUS DISEASES, 2017, 23 (02) :204-211

[6] Streptococcus suis, an important pig pathogen and emerging zoonotic agent-an update on the worldwide distribution based on serotyping and sequence typing [J].

Goyette-Desjardins, Guillaume ;

Auger, Jean-Philippe ;

Xu, Jianguo ;

Segura, Mariela ;

Gottschalk, Marcelo .

EMERGING MICROBES & INFECTIONS, 2014, 3

[7] Streptococcus suis serotyping by a new multiplex PCR [J].

Kerdsin, Anusak ;

Akeda, Yukihiro ;

Hatrongjit, Rujirat ;

Detchawna, Unchaya ;

Sekizaki, Tsutomu ;

Hamada, Shigeyuki ;

Gottschalk, Marcelo ;

Oishi, Kazunori .

JOURNAL OF MEDICAL MICROBIOLOGY, 2014, 63 :824-830

[8] Development of a multilocus sequence typing scheme for the pig pathogen Streptococcus suis:: Identification of virulent clones and potential capsular serotype exchange [J].

King, SJ ;

Leigh, JA ;

Heath, PJ ;

Luque, I ;

Tarradas, C ;

Dowson, CG ;

Whatmore, AM .

JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (10) :3671-3680

[9] Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees [J].

Letunic, Ivica ;

Bork, Peer .

NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W242-W245

[10] De novo assembly of human genomes with massively parallel short read sequencing [J].

Li, Ruiqiang ;

Zhu, Hongmei ;

Ruan, Jue ;

Qian, Wubin ;

Fang, Xiaodong ;

Shi, Zhongbin ;

Li, Yingrui ;

Li, Shengting ;

Shan, Gao ;

Kristiansen, Karsten ;

Li, Songgang ;

Yang, Huanming ;

Wang, Jian ;

Wang, Jun .

GENOME RESEARCH, 2010, 20 (02) :265-272

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