Complex local dynamics in DNA on the picosecond and nanosecond time scales

被引:118
作者
Brauns, EB [1 ]
Madaras, ML
Coleman, RS
Murphy, CJ
Berg, MA
机构
[1] Univ S Carolina, Dept Chem & Biochem, Columbia, SC 29208 USA
[2] Ohio State Univ, Dept Chem, Columbus, OH 43210 USA
关键词
D O I
10.1103/PhysRevLett.88.158101
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Time-resolved Stokes shift measurements of the local structural relaxation of three DNA oligonucleotides are presented. Logarithmic relaxation is seen for over three decades in time (40 ps-40 ns), indicating a complex relaxation among a large number of conformational substates. The observed relaxation is the same in all the sequences. Sequence dependence of the localized dynamics of DNA does not appear within this time range. We infer that 30%-50% of the relaxation is faster than 40 ps, has a nonlogarithmic decay and has a sequence dependent amplitude.
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页数:4
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共 31 条
[1]  
[Anonymous], 1964, Handbook of mathematical functions
[2]  
Barbara P. F., 1990, ADV PHOTOCHEM, V15, P1, DOI [DOI 10.1002/9780470133453.CHL, DOI 10.1103/PhysRevLett.88.158101]
[3]   THEORY OF TWISTING AND BENDING OF CHAIN MACROMOLECULES - ANALYSIS OF THE FLUORESCENCE DEPOLARIZATION OF DNA [J].
BARKLEY, MD ;
ZIMM, BH .
JOURNAL OF CHEMICAL PHYSICS, 1979, 70 (06) :2991-3007
[4]   DYNAMICS IN LOW-TEMPERATURE GLASSES - THEORY AND EXPERIMENTS ON OPTICAL DEPHASING, SPECTRAL DIFFUSION, AND HYDROGEN TUNNELING [J].
BERG, M ;
WALSH, CA ;
NARASIMHAN, LR ;
LITTAU, KA ;
FAYER, MD .
JOURNAL OF CHEMICAL PHYSICS, 1988, 88 (03) :1564-1587
[5]   Measurement of local DNA reorganization on the picosecond and nanosecond time scales [J].
Brauns, EB ;
Madaras, ML ;
Coleman, RS ;
Murphy, CJ ;
Berg, MA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (50) :11644-11649
[6]   SPECTRAL DIFFUSION OF A PHOTOCHEMICAL PROTON-TRANSFER SYSTEM IN AN AMORPHOUS ORGANIC HOST - QUINIZARIN IN ALCOHOL GLASS [J].
BREINL, W ;
FRIEDRICH, J ;
HAARER, D .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (09) :3915-3921
[7]   Slow logarithmic relaxation in models with hierarchically constrained dynamics [J].
Brey, JJ ;
Prados, A .
PHYSICAL REVIEW E, 2001, 63 (02) :0211081-0211084
[8]   Molecular dynamics simulation of nucleic acids [J].
Cheatham, TE ;
Kollman, PA .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2000, 51 :435-471
[9]   Synthesis of a novel coumarin C-riboside as a photophysical probe of oligonucleotide dynamics [J].
Coleman, RS ;
Madaras, ML .
JOURNAL OF ORGANIC CHEMISTRY, 1998, 63 (16) :5700-5703
[10]   Higher-order glass-transition singularities in colloidal systems with attractive interactions [J].
Irish Ctr. Colloid Sci. Biomaterials, University College Dublin, Belfield, Dublin 4, Ireland ;
不详 ;
不详 .
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 2001, 63 (1 I) :011401-011401