13C Shielding Tensors of Crystalline Amino Acids and Peptides: Theoretical Predictions Based on Periodic Structure Models

被引:31
作者
Zheng, Anmin [1 ]
Liu, Shang-Bin [2 ]
Deng, Feng [1 ]
机构
[1] Chinese Acad Sci, Wuhan Inst Phys & Math, Wuhan Ctr Magnet Resonance, State Key Lab Magnet Resonance & Atom & Mol Phys, Wuhan 430071, Peoples R China
[2] Acad Sinica, Inst Atom & Mol Sci, Taipei 10617, Taiwan
关键词
amino acids; peptides; NMR chemical shielding tensors; DFT calculations; surrounding lattice effects; GIPAW method; SOLID-STATE NMR; CHEMICAL-SHIFT TENSORS; O-17; NMR; 1ST-PRINCIPLES; ONIOM; TETRAHALIDES; COMPUTATION; POLYMORPHS; PARAMETERS; CHEMISTRY;
D O I
10.1002/jcc.21118
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Precise theoretical predictions of NMR parameters are helpful for the spectroscopic identification of complicated biological molecules, especially for the carbon shielding tensors in amino acids. The C-13 shielding tensors of various crystalline amino acids and peptides have been calculated using the gauge-including projector augmented wave (GIPAW) method based on two different periodic structure models, namely that deduced from available crystallographic data and that from theoretically optimized structures. The incorporation of surrounding lattice effects is found to be crucial in obtaining reliable predictions of C-13 shielding tensors that are comparable to the experimental data. This is accomplished by refining the experimental crystallographic data of the amino acids and peptides at the GGA/PBE level by which more accurate intramolecular C-H bond lengths and intermolecular hydrogen-bonding interactions are obtained. Accordingly, more accurate predictions of C-13 shielding tensors comparable to the experimental results (within a maximum deviation of +/- 10 ppm) were achieved, rendering more explicit C-13 shielding tensors assignments for solid biological systems particularly for amino acids with multiple carboxyl carbons, such as asparagine, glutamine, and glutamic acid. (C) 2008 Wiley Periodicals, Inc. J Comput Chem 30: 222-235, 2009
引用
收藏
页码:222 / 235
页数:14
相关论文
共 52 条
[1]  
Ashbrook SE, 2007, PHYS CHEM CHEM PHYS, V9, P1587, DOI 10.1039/b618211a
[2]   Ab initio study of 13Cα chemical shift anisotropy tensors in peptides [J].
Bim, J ;
Poon, A ;
Mao, Y ;
Ramamoorthy, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (27) :8529-8534
[3]   Quasiplanarity of the peptide bond [J].
Chalupsky, Jakub ;
Vondrasek, Jiri ;
Spirko, Vladimir .
JOURNAL OF PHYSICAL CHEMISTRY A, 2008, 112 (04) :693-699
[4]   First-principles studies of C-13NMR chemical shift tensors of amino acids in crystal state [J].
Chen, X ;
Zhan, CG .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2004, 682 (1-3) :73-82
[5]   Theoretical investigation on 1H and 13C NMR chemical shifts of small alkanes and chloroalkanes [J].
d'Antuono, Philippe ;
Botek, Edith ;
Champagne, Benoit ;
Spassova, Milena ;
Denkova, Pavletta .
JOURNAL OF CHEMICAL PHYSICS, 2006, 125 (14)
[6]   PREDICTING C-13 NUCLEAR-MAGNETIC-RESONANCE CHEMICAL SHIELDING TENSORS IN ZWITTERIONIC L-THREONINE AND L-TYROSINE VIA QUANTUM-CHEMISTRY [J].
DEDIOS, AC ;
LAWS, DD ;
OLDFIELD, E .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (17) :7784-7786
[7]  
Frisch M. J., 2016, GAUSSIAN 16 REVISION
[8]   Combined first-principles computational and experimental multinuclear solid-state NMR investigation of amino acids [J].
Gervais, C ;
Dupree, R ;
Pike, KJ ;
Bonhomme, C ;
Profeta, M ;
Pickard, CJ ;
Mauri, F .
JOURNAL OF PHYSICAL CHEMISTRY A, 2005, 109 (31) :6960-6969
[9]   Solid-state NMR and computational studies of 4-methyl-2-nitroacetanilide [J].
Harris, RK ;
Ghi, PY ;
Hammond, RB ;
Ma, CY ;
Roberts, KJ ;
Yates, JR ;
Pickard, CJ .
MAGNETIC RESONANCE IN CHEMISTRY, 2006, 44 (03) :325-333
[10]   Assigning carbon-13 NMR spectra to crystal structures by the INADEQUATE pulse sequence and first principles computation: a case study of two forms of testosterone [J].
Harris, RK ;
Joyce, SA ;
Pickard, CJ ;
Cadars, S ;
Emsley, L .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2006, 8 (01) :137-143