Human Connectome Project informatics: Quality control, database services, and data visualization

被引：296

作者：

Marcus, Daniel S. ^{[1
]}

Harms, Michael P. ^{[2
]}

Snyder, Abraham Z. ^{[1
]}

Jenkinson, Mark ^{[3
]}

Wilson, J. Anthony ^{[1
]}

Glasser, Matthew F. ^{[4
]}

Barch, Deanna M. ^{[2
]}

Archie, Kevin A. ^{[1
]}

Burgess, Gregory C. ^{[2
]}

Ramaratnam, Mohana ^{[5
]}

Hodge, Michael ^{[1
]}

Horton, William ^{[1
]}

Herrick, Rick ^{[1
]}

Olsen, Timothy ^{[6
]}

McKay, Michael ^{[1
]}

House, Matthew ^{[1
]}

Hileman, Michael ^{[1
]}

Reid, Erin ^{[4
]}

Harwell, John ^{[4
]}

Coalson, Timothy ^{[4
]}

Schindler, Jon ^{[4
]}

Elam, Jennifer S. ^{[4
]}

Curtiss, Sandra W. ^{[4
]}

Van Essen, David C. ^{[4
]}

机构：

[1] Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA

[2] Washington Univ, Sch Med, Dept Psychiat, St Louis, MO 63110 USA

[3] Univ Oxford, John Radcliffe Hosp, Oxford Ctr Funct Magnet Resonance Imaging Brain, Oxford OX3 9DU, England

[4] Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USA

[5] NRG India, Pune, Maharashtra, India

[6] Deck5 Consulting, Normal, IL USA

来源：

NEUROIMAGE | 2013年 / 80卷

关键词：

FUNCTIONAL CONNECTIVITY; PHYSIOLOGICAL NOISE; 7; T; MRI; FMRI; BRAIN; VALIDATION; NETWORKS; IMPACT; MOTION;

D O I：

10.1016/j.neuroimage.2013.05.077

中图分类号：

Q189 [神经科学];

学科分类号：

071006 ;

摘要：

The Human Connectome Project (HCP) has developed protocols, standard operating and quality control procedures, and a suite of informatics tools to enable high throughput data collection, data sharing, automated data processing and analysis, and data mining and visualization. Quality control procedures include methods to maintain data collection consistency over time, to measure head motion, and to establish quantitative modality-specific overall quality assessments. Database services developed as customizations of the XNAT imaging informatics platform support both internal daily operations and open access data sharing. The Connectome Workbench visualization environment enables user interaction with HCP data and is increasingly integrated with the HCP's database services. Here we describe the current state of these procedures and tools and their application in the ongoing HCP study. (C) 2013 Elsevier Inc. All rights reserved.

引用

页码：202 / 219

页数：18

共 31 条

[1] Aspera, 2013, ASP FASP HIGH SPEED
[2] Function in the human connectome: Task-fMRI and individual differences in behavior
Barch, Deanna M.
Burgess, Gregory C.
Harms, Michael P.
Petersen, Steven E.
Schlaggar, Bradley L.
Corbetta, Maurizio
Glasser, Matthew F.
Curtiss, Sandra
Dixit, Sachin
Feldt, Cindy
Nolan, Dan
Bryant, Edward
Hartley, Tucker
Footer, Owen
Bjork, James M.
Poldrack, Russ
Smith, Steve
Johansen-Berg, Heidi
Snyder, Abraham Z.
Van Essen, David C.
[J]. NEUROIMAGE, 2013, 80 : 169 - 189
[3] Investigations into resting-state connectivity using independent component analysis
Beckmann, CF
DeLuca, M
Devlin, JT
Smith, SM
[J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1457) : 1001 - 1013
[4] FUNCTIONAL CONNECTIVITY IN THE MOTOR CORTEX OF RESTING HUMAN BRAIN USING ECHO-PLANAR MRI
BISWAL, B
YETKIN, FZ
HAUGHTON, VM
HYDE, JS
[J]. MAGNETIC RESONANCE IN MEDICINE, 1995, 34 (04) : 537 - 541
[5] Mapping the MRI voxel volume in which thermal noise matches physiological noise-Implications for fMRI
Bodurka, J.
Ye, F.
Petridou, N.
Murphy, K.
Bandettini, P. A.
[J]. NEUROIMAGE, 2007, 34 (02) : 542 - 549
[6] Report on a multicenter fMRI quality assurance protocol
Friedman, L
Glover, GH
[J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2006, 23 (06) : 827 - 839
[7] The minimal preprocessing pipelines for the Human Connectome Project
Glasser, Matthew F.
Sotiropoulos, Stamatios N.
Wilson, J. Anthony
Coalson, Timothy S.
Fischl, Bruce
Andersson, Jesper L.
Xu, Junqian
Jbabdi, Saad
Webster, Matthew
Polimeni, Jonathan R.
Van Essen, David C.
Jenkinson, Mark
[J]. NEUROIMAGE, 2013, 80 : 105 - 124
[8] Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies
Glover, Gary H.
Mueller, Bryon A.
Turner, Jessica A.
van Erp, Theo G. M.
Liu, Thomas T.
Greve, Douglas N.
Voyvodic, James T.
Rasmussen, Jerod
Brown, Gregory G.
Keator, David B.
Calhoun, Vince D.
Lee, Hyo Jong
Ford, Judith M.
Mathalon, Daniel H.
Diaz, Michele
O'Leary, Daniel S.
Gadde, Syam
Preda, Adrian
Lim, Kelvin O.
Wible, Cynthia G.
Stern, Hal S.
Belger, Aysenil
McCarthy, Gregory
Ozyurt, Burak
Potkin, Steven G.
[J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2012, 36 (01) : 39 - 54
[9] A Novel Method for Quantifying Scanner Instability in fMRI
Greve, Douglas N.
Mueller, Bryon A.
Liu, Thomas
Turner, Jessica A.
Voyvodic, James
Yetter, Elizabeth
Diaz, Michele
McCarthy, Gregory
Wallace, Stuart
Roach, Brian J.
Ford, Judy M.
Mathalon, Daniel H.
Calhoun, Vince D.
Wible, Cynthia G.
Brown, Gregory G.
Potkin, Steven G.
Glover, Gary
[J]. MAGNETIC RESONANCE IN MEDICINE, 2011, 65 (04) : 1053 - 1061
[10] Computerized neurocognitive scanning: I. Methodology and validation in healthy people
Gur, RC
Ragland, JD
Moberg, PJ
Turner, TH
Bilker, WB
Kohler, C
Siegel, SJ
Gur, RE
[J]. NEUROPSYCHOPHARMACOLOGY, 2001, 25 (05) : 766 - 776

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