The international nucleotide sequence database collaboration

被引：125

作者：

Karsch-Mizrachi, Ilene ^{[1
]}

Takagi, Toshihisa ^{[2
]}

Cochrane, Guy ^{[3
]}

机构：

[1] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20894 USA

[2] Natl Inst Genet, DDBJ Ctr, Mishima, Shizuoka, Japan

[3] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2018年 / 46卷 / D1期

基金：

英国生物技术与生命科学研究理事会; 欧盟地平线“2020”; 美国国家卫生研究院;

关键词：

REMINDER; ARCHIVE;

D O I：

10.1093/nar/gkx1097

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

For more than 30 years, the International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org/) has been committed to capturing, preserving and providing access to comprehensive public domain nucleotide sequence and associated metadata which enables discovery in biomedicine, biodiversity and biological sciences. Since 1987, the DNA Data Bank of Japan (DDBJ) at the National Institute for Genetics in Mishima, Japan; the European Nucleotide Archive (ENA) at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) in Hinxton, UK; and GenBank at National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health in Bethesda, Maryland, USA have worked collaboratively to enable access to nucleotide sequence data in standardized formats for the worldwide scientific community. In this article, we reiterate the principles of the INSDC collaboration and briefly summarize the trends of the archival content.

引用

页码：D48 / D51

页数：4

共 16 条

[11] DNA Data Bank of Japan [J].

Mashima, Jun ;

Kodama, Yuichi ;

Fujisawa, Takatomo ;

Katayama, Toshiaki ;

Okuda, Yoshihiro ;

Kaminuma, Eli ;

Ogasawara, Osamu ;

Okubo, Kousaku ;

Nakamura, Yasukazu ;

Takagi, Toshihisa .

NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D25-D31

[12] Reminder to deposit DNA sequences [J].

Salzberg, Steven L. .

NATURE, 2016, 533 (7602) :179-179

[13] European Nucleotide Archive in 2016 [J].

Toribio, Ana Luisa ;

Alako, Blaise ;

Amid, Clara ;

Cerdeno-Tarraga, Ana ;

Clarke, Laura ;

Cleland, Iain ;

Fairley, Susan ;

Gibson, Richard ;

Goodgame, Neil ;

ten Hoopen, Petra ;

Jayathilaka, Suran ;

Kay, Simon ;

Leinonen, Rasko ;

Liu, Xin ;

Martinez-Villacorta, Josue ;

Pakseresht, Nima ;

Rajan, Jeena ;

Reddy, Kethi ;

Rosello, Marc ;

Silvester, Nicole ;

Smirnov, Dmitriy ;

Vaughan, Daniel ;

Zalunin, Vadim ;

Cochrane, Guy .

NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D32-D36

[14] NCBI's Database of Genotypes and Phenotypes: dbGaP [J].

Tryka, Kimberly A. ;

Hao, Luning ;

Sturcke, Anne ;

Jin, Yumi ;

Wang, Zhen Y. ;

Ziyabari, Lora ;

Lee, Moira ;

Popova, Natalia ;

Sharopova, Nataliya ;

Kimura, Masato ;

Feolo, Michael .

NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D975-D979

[15] Comment: The FAIR Guiding Principles for scientific data management and stewardship [J].

Wilkinson, Mark D. ;

Dumontier, Michel ;

Aalbersberg, IJsbrand Jan ;

Appleton, Gabrielle ;

Axton, Myles ;

Baak, Arie ;

Blomberg, Niklas ;

Boiten, Jan-Willem ;

Santos, Luiz Bonino da Silva ;

Bourne, Philip E. ;

Bouwman, Jildau ;

Brookes, Anthony J. ;

Clark, Tim ;

Crosas, Merce ;

Dillo, Ingrid ;

Dumon, Olivier ;

Edmunds, Scott ;

Evelo, Chris T. ;

Finkers, Richard ;

Gonzalez-Beltran, Alejandra ;

Gray, Alasdair J. G. ;

Groth, Paul ;

Goble, Carole ;

Grethe, Jeffrey S. ;

Heringa, Jaap ;

't Hoen, Peter A. C. ;

Hooft, Rob ;

Kuhn, Tobias ;

Kok, Ruben ;

Kok, Joost ;

Lusher, Scott J. ;

Martone, Maryann E. ;

Mons, Albert ;

Packer, Abel L. ;

Persson, Bengt ;

Rocca-Serra, Philippe ;

Roos, Marco ;

van Schaik, Rene ;

Sansone, Susanna-Assunta ;

Schultes, Erik ;

Sengstag, Thierry ;

Slater, Ted ;

Strawn, George ;

Swertz, Morris A. ;

Thompson, Mark ;

van der Lei, Johan ;

van Mulligen, Erik ;

Velterop, Jan ;

Waagmeester, Andra ;

Wittenburg, Peter .

SCIENTIFIC DATA, 2016, 3

[16] Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications [J].

Yilmaz, Pelin ;

Kottmann, Renzo ;

Field, Dawn ;

Knight, Rob ;

Cole, James R. ;

Amaral-Zettler, Linda ;

Gilbert, Jack A. ;

Karsch-Mizrachi, Ilene ;

Johnston, Anjanette ;

Cochrane, Guy ;

Vaughan, Robert ;

Hunter, Christopher ;

Park, Joonhong ;

Morrison, Norman ;

Rocca-Serra, Philippe ;

Sterk, Peter ;

Arumugam, Manimozhiyan ;

Bailey, Mark ;

Baumgartner, Laura ;

Birren, Bruce W. ;

Blaser, Martin J. ;

Bonazzi, Vivien ;

Booth, Tim ;

Bork, Peer ;

Bushman, Frederic D. ;

Buttigieg, Pier Luigi ;

Chain, Patrick S. G. ;

Charlson, Emily ;

Costello, Elizabeth K. ;

Huot-Creasy, Heather ;

Dawyndt, Peter ;

DeSantis, Todd ;

Fierer, Noah ;

Fuhrman, Jed A. ;

Gallery, Rachel E. ;

Gevers, Dirk ;

Gibbs, Richard A. ;

Gil, Inigo San ;

Gonzalez, Antonio ;

Gordon, Jeffrey I. ;

Guralnick, Robert ;

Hankeln, Wolfgang ;

Highlander, Sarah ;

Hugenholtz, Philip ;

Jansson, Janet ;

Kau, Andrew L. ;

Kelley, Scott T. ;

Kennedy, Jerry ;

Knights, Dan ;

Koren, Omry .

NATURE BIOTECHNOLOGY, 2011, 29 (05) :415-420

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