An efficient algorithm for joint feature screening in ultrahigh-dimensional Cox's model

被引:2
作者
Chen, Xiaolin [1 ]
Liu, Catherine Chunling [2 ]
Xu, Sheng [2 ]
机构
[1] Qufu Normal Univ, Sch Stat, Qufu, Shandong, Peoples R China
[2] Hong Kong Polytech Univ, Dept Appl Math, Kowloon, Hong Kong, Peoples R China
基金
中国国家自然科学基金;
关键词
Cox's model; LASSO initial; Locally Lipschitz optimization; Non-monotone proximal gradient; Joint feature screening; GENE-EXPRESSION SIGNATURE; VARIABLE SELECTION; PREDICTS SURVIVAL; LASSO;
D O I
10.1007/s00180-020-01032-9
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
The Cox model is an exceedingly popular semiparametric hazard regression model for the analysis of time-to-event accompanied by explanatory variables. Within the ultrahigh-dimensional data setting, not like the marginal screening strategy, there is a joint feature screening method based on the partial likelihood of the Cox model but it leaves computational feasibility unsolved. In this paper, we develop an enhanced iterative hard-thresholding algorithm by adapting the non-monotone proximal gradient method under the Cox model. The proposed algorithm is efficient because it is computationally both effective and fast. Meanwhile, our proposed algorithm begins with a LASSO initial estimator rather than the naive zero initial and still enjoys sure screening in theory and further enhances the computational efficiency in practice. We also give a rigorous theory proof. The advantage of our proposed work is demonstrated by numerical studies and illustrated by the diffuse large B-cell lymphoma data example.
引用
收藏
页码:885 / 910
页数:26
相关论文
共 50 条
[31]   Censored cumulative residual independent screening for ultrahigh-dimensional survival data [J].
Zhang, Jing ;
Yin, Guosheng ;
Liu, Yanyan ;
Wu, Yuanshan .
LIFETIME DATA ANALYSIS, 2018, 24 (02) :273-292
[32]   ExSIS: Extended sure independence screening for ultrahigh-dimensional linear models [J].
Ahmed, Talal ;
Bajwa, Waheed U. .
SIGNAL PROCESSING, 2019, 159 :33-48
[33]   Feature screening based on distance correlation for ultrahigh-dimensional censored data with covariate measurement error [J].
Chen, Li-Pang .
COMPUTATIONAL STATISTICS, 2021, 36 (02) :857-884
[34]   Feature Selection for Varying Coefficient Models With Ultrahigh-Dimensional Covariates [J].
Liu, Jingyuan ;
Li, Runze ;
Wu, Rongling .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2014, 109 (505) :266-274
[35]   Conditional quantile correlation screening procedure for ultrahigh-dimensional varying coefficient models [J].
Li, Xiangjie ;
Ma, Xuejun ;
Zhang, Jingxiao .
JOURNAL OF STATISTICAL PLANNING AND INFERENCE, 2018, 197 :69-92
[36]   Fast Lasso method for large-scale and ultrahigh-dimensional Cox model with applications to UK Biobank [J].
Li, Ruilin ;
Chang, Christopher ;
Justesen, Johanne M. ;
Tanigawa, Yosuke ;
Qian, Junyang ;
Hastie, Trevor ;
Rivas, Manuel A. ;
Tibshirani, Robert .
BIOSTATISTICS, 2022, 23 (02) :522-540
[37]   Survival Impact Index and Ultrahigh-Dimensional Model-Free Screening with Survival Outcomes [J].
Li, Jialiang ;
Zheng, Qi ;
Peng, Limin ;
Huang, Zhipeng .
BIOMETRICS, 2016, 72 (04) :1145-1154
[38]   Conditional distance correlation screening for sparse ultrahigh-dimensional models [J].
Song, Fengli ;
Chen, Yurong ;
Lai, Peng .
APPLIED MATHEMATICAL MODELLING, 2020, 81 :232-252
[39]   Interaction screening by Kendall's partial correlation for ultrahigh-dimensional data with survival trait [J].
Wang, Jie-Huei ;
Chen, Yi-Hau .
BIOINFORMATICS, 2020, 36 (09) :2763-2769
[40]   Ultrahigh dimensional feature screening via projection [J].
Li, Xingxiang ;
Cheng, Guosheng ;
Wang, Liming ;
Lai, Peng ;
Song, Fengli .
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2017, 114 :88-104