Structural and Functional Impact of Parkinson Disease-Associated Mutations in the E3 Ubiquitin Ligase Parkin

被引:66
作者
Fiesel, Fabienne C. [1 ]
Caulfield, Thomas R. [1 ]
Moussaud-Lamodiere, Elisabeth L. [1 ]
Ogaki, Kotaro [1 ]
Dourado, Daniel F. A. R. [2 ]
Flores, Samuel C. [2 ]
Ross, Owen A. [1 ,3 ]
Springer, Wolfdieter [1 ,3 ]
机构
[1] Mayo Clin, Dept Neurosci, Jacksonville, FL 32224 USA
[2] Uppsala Univ, Dept Cell & Mol Biol, Computat & Syst Biol, Uppsala, Sweden
[3] Mayo Clin, Mayo Grad Sch, Neurobiol Dis, Jacksonville, FL 32224 USA
关键词
PARK2; PINK1; Parkinson; EOPD; mitophagy; molecular dynamics; MOLECULAR-DYNAMICS; MITOCHONDRIAL TRANSLOCATION; PATHOGENIC MUTATIONS; PINK1; MITOPHAGY; RNA; PHOSPHORYLATION; LOCALIZATION; P62/SQSTM1; ACTIVATION;
D O I
10.1002/humu.22808
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mutations in the PARKIN/PARK2 gene that result in loss-of-function of the encoded, neuroprotective E3 ubiquitin ligase Parkin cause recessive, familial early-onset Parkinson disease. As an increasing number of rare Parkin sequence variants with unclear pathogenicity are identified, structure-function analyses will be critical to determine their disease relevance. Depending on the specific amino acids affected, several distinct pathomechanisms can result in loss of Parkin function. These include disruption of overall Parkin folding, decreased solubility, and protein aggregation. However pathogenic effects can also result from misregulation of Parkin autoinhibition and of its enzymatic functions. In addition, interference of binding to coenzymes, substrates, and adaptor proteins can affect its catalytic activity too. Herein, we have performed a comprehensive structural and functional analysis of 21 PARK2 missense mutations distributed across the individual protein domains. Using this combined approach, we were able to pinpoint some of the pathogenic mechanisms of individual sequence variants. Similar analyses will be critical in gaining a complete understanding of the complex regulations and enzymatic functions of Parkin. These studies will not only highlight the important residues, but will also help to develop novel therapeutics aimed at activating and preserving an active, neuroprotective form of Parkin.
引用
收藏
页码:774 / 786
页数:13
相关论文
共 64 条
[1]  
[Anonymous], 2010, MAESTR 9 1 M 9 1
[2]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[3]   Motion of transfer RNA from the A/T state into the A-site using docking and simulations [J].
Caulfield, Thomas ;
Devkota, Batsal .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2012, 80 (11) :2489-2500
[4]   Molecular dynamics simulations of human DNA methyltransferase 3B with selective inhibitor nanaomycin A [J].
Caulfield, Thomas ;
Medina-Franco, Jose L. .
JOURNAL OF STRUCTURAL BIOLOGY, 2011, 176 (02) :185-191
[5]   Phosphorylation by PINK1 Releases the UBL Domain and Initializes the Conformational Opening of the E3 Ubiquitin Ligase Parkin [J].
Caulfield, Thomas R. ;
Fiesel, Fabienne C. ;
Moussaud-Lamodiere, Elisabeth L. ;
Dourado, Daniel F. A. R. ;
Flores, Samuel C. ;
Springer, Wolfdieter .
PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (11)
[6]  
Caulfield Thomas R, 2011, J Biophys, V2011, P219515, DOI 10.1155/2011/219515
[7]   Autoregulation of Parkin activity through its ubiquitin-like domain [J].
Chaugule, Viduth K. ;
Burchell, Lynn ;
Barber, Kathryn R. ;
Sidhu, Ateesh ;
Leslie, Simon J. ;
Shaw, Gary S. ;
Walden, Helen .
EMBO JOURNAL, 2011, 30 (14) :2853-2867
[8]  
Cheatham TE, 2001, BIOPOLYMERS, V56, P232
[9]   Parkin Mediates Apparent E2-Independent Monoubiquitination In Vitro and Contains an Intrinsic Activity That Catalyzes Polyubiquitination [J].
Chew, Katherine C. M. ;
Matsuda, Noriyuki ;
Saisho, Keiko ;
Lim, Grace G. Y. ;
Chai, Chou ;
Tan, Hui-Mei ;
Tanaka, Keiji ;
Lim, Kah-Leong .
PLOS ONE, 2011, 6 (05)
[10]   RING finger 1 mutations in Parkin produce altered localization of the protein [J].
Cookson, MR ;
Lockhart, PJ ;
O'Farrell, C ;
Schlossmacher, M ;
Farrer, MJ .
HUMAN MOLECULAR GENETICS, 2003, 12 (22) :2957-2965