Genomics in marine monitoring: New opportunities for assessing marine health status

被引：177

作者：

Bourlat, Sarah J. ^{[1
]}

Borja, Angel ^{[2
]}

Gilbert, Jack ^{[3
]}

Taylor, Martin I. ^{[4
]}

Davies, Neil ^{[5
,6
]}

Weisberg, Stephen B. ^{[7
]}

Griffith, John F. ^{[7
]}

Lettieri, Teresa ^{[8
]}

Field, Dawn ^{[6
,9
]}

Benzie, John ^{[10
,11
]}

Gloeckner, Frank Oliver ^{[12
,13
]}

Rodriguez-Ezpeleta, Naiara ^{[2
]}

Faith, Daniel P. ^{[14
]}

Bean, Tim P. ^{[15
]}

Obst, Matthias ^{[1
]}

机构：

[1] Univ Gothenburg, Dept Biol & Environm Sci, Box 463, SE-40530 Gothenburg, Sweden

[2] AZTI Tecnalia, Div Marine Res, Pasaia 20110, Spain

[3] Univ Chicago, Argonne Natl Lab, Argonne, IL 60439 USA

[4] Bangor Univ, Sch Biol Sci, Bangor LL57 2UW, Gwynedd, Wales

[5] Univ Calif Berkeley, Gump South Pacific Res Stn, Moorea, France

[6] Univ Oxford, Dept Zool, Biodivers Inst, Oxford OX1 3PS, England

[7] Southern Calif Coastal Water Res Project Author, Costa Mesa, CA 92626 USA

[8] European Commiss, DG Joint Res Ctr, Inst Environm & Sustainabil, Ispra, Italy

[9] Ctr Ecol & Hydrol, Oxford, England

[10] Natl Univ Ireland Univ Coll Cork, Sch Biol Earth & Environm Sci, Cork, Ireland

[11] WorldFish Ctr, Bayan Lepas 11960, Penang, Malaysia

[12] Univ Bremen, D-28359 Bremen, Germany

[13] Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany

[14] Australian Museum, Sydney, NSW 2010, Australia

[15] Cefas Weymouth Lab, Ctr Environm Fisheries & Aquaculture Sci, Weymouth DT4 8UB, Dorset, England

来源：

MARINE POLLUTION BULLETIN | 2013年 / 74卷 / 01期

基金：

英国自然环境研究理事会;

关键词：

Marine monitoring; Marine health status; Genomics; Innovative monitoring methods; Indicators; Genomic observatories; PHYLOGENETIC DIVERSITY PD; DNA; BIODIVERSITY; CHALLENGES; LIFE; TECHNOLOGY; MANAGEMENT; PROFILES; LESSONS; BARCODE;

D O I：

10.1016/j.marpolbul.2013.05.042

中图分类号：

X [环境科学、安全科学];

学科分类号：

08 ; 0830 ;

摘要：

This viewpoint paper explores the potential of genomics technology to provide accurate, rapid, and cost efficient observations of the marine environment. The use of such approaches in next generation marine monitoring programs will help achieve the goals of marine legislation implemented world-wide. Genomic methods can yield faster results from monitoring, easier and more reliable taxonomic identification, as well as quicker and better assessment of the environmental status of marine waters. A summary of genomic methods that are ready or show high potential for integration into existing monitoring programs is provided (e.g. qPCR, SNP based methods, DNA barcoding, microarrays, metagenetics, metagenomics, transcriptomics). These approaches are mapped to existing indicators and descriptors and a series of case studies is presented to assess the cost and added value of these molecular techniques in comparison with traditional monitoring systems. Finally, guidelines and recommendations are suggested for how such methods can enter marine monitoring programs in a standardized manner. (C) 2013 The Authors. Published by Elsevier Ltd. All rights reserved.

引用

页码：19 / 31

页数：13

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