Complete chloroplast genomes of two Miscanthus species

被引：9

作者：

Nah, Gyoungju ^{[1
]}

Im, Ji-Hoon ^{[1
]}

Lim, Soo-Hyun ^{[1
]}

Kim, Kyunghee ^{[1
]}

Choi, Ah Young ^{[2
]}

Yook, Min Jung ^{[1
]}

Kim, Soonok ^{[3
]}

Kim, Changmu ^{[3
]}

Kim, Do-Soon ^{[1
]}

机构：

[1] Seoul Natl Univ, Res Inst Agr & Life Sci, Coll Agr & Life Sci, Dept Plant Sci, Seoul 151921, South Korea

[2] Seoul Natl Univ, NICEM, Coll Agr & Life Sci, Seoul, South Korea

[3] Natl Inst Biol Resources, Biol & Genet Resources Assessment Div, Incheon, South Korea

来源：

MITOCHONDRIAL DNA PART A | 2016年 / 27卷 / 06期

关键词：

Chloroplast genome; divergence time; Miscanthus; next-generation sequencing; phylogeny;

D O I：

10.3109/19401736.2015.1089500

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete chloroplast (cp) genomes of two Miscanthus species, M. sinensis and M. sacchariflorus, were sequenced and investigated for genes, genome size variation, and polymorphisms. There are 170 genes in both cp genomes, consisting of 122 mRNA genes (84 protein-coding genes and 38 hypothetical genes), 40 tRNA genes, and 8 rRNA genes. The cp genome contains two inverted repeat (IR) regions, separated by large single copy (LSC) region and small single copy (SSC) region. Indels were responsible for 40 bp difference in cp genome size in two species. In addition, we established phylogenetic relationship with other monocot cp genomes, and estimated divergence time. The two Miscanthus species clustered together among other C-4 monocot species and the divergence time of two Miscanthus species was approximately 0.5 1-0.84 Mya.

引用

页码：4359 / 4360

页数：2

共 50 条

[21] Complete chloroplast genomes of four Syzygium species and comparative analysis with other Syzygium species
Zhixia Sun
Yi Zhang
Shuaiyu Zou
Shuo Zhang
Chen Feng
Biologia, 2024, 79 : 45 - 58
[22] Molecular Structure and Phylogenetic Analyses of Complete Chloroplast Genomes of Two Aristolochia Medicinal Species
Zhou, Jianguo
Chen, Xinlian
Cui, Yingxian
Sun, Wei
Li, Yonghua
Wang, Yu
Song, Jingyuan
Yao, Hui
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 18 (09)
[23] The complete chloroplast genomes of Lycopus lucidus and Agastache rugosa, two herbal species in tribe Mentheae of Lamiaceae family
Wang, Yan
Wang, Hanping
Zhou, Baozhen
Yue, Zhiyong
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (01): : 89 - 90
[24] Two complete chloroplast genomes of white campion (Silene latifolia) from male and female individuals
Wu, Zhiqiang
Tembrock, Luke R.
MITOCHONDRIAL DNA PART A, 2017, 28 (03) : 375 - 376
[25] Comparative Analysis and Characterization of Ten Complete Chloroplast Genomes of Eremurus Species (Asphodelaceae)
Makhmudjanov, Dilmurod
Abdullaev, Davlatali
Juramurodov, Inom
Tuychiev, Shakhzodbek
Yusupov, Ziyoviddin
Sun, Hang
Tojibaev, Komiljon
Deng, Tao
FORESTS, 2023, 14 (09):
[26] Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus
Yu, Jiaojun
Fu, Jun
Fang, Yuanping
Xiang, Jun
Dong, Hongjin
BMC GENOMICS, 2022, 23 (01)
[27] Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus
Jiaojun Yu
Jun Fu
Yuanping Fang
Jun Xiang
Hongjin Dong
BMC Genomics, 23
[28] The Complete Chloroplast Genomes of Gynostemma Reveal the Phylogenetic Relationships of Species within the Genus
Gan, Jiaxia
Li, Ying
Tang, Deying
Guo, Baolin
Li, Doudou
Cao, Feng
Sun, Chao
Yu, Liying
Yan, Zhuyun
GENES, 2023, 14 (04)
[29] Complete Chloroplast Genomes of Three Salix Species: Genome Structures and Phylogenetic Analysis
Zhang, Xue-Jiao
Liu, Kang-Jia
Wang, Ya-Chao
He, Jian
Wu, Yuan-Mi
Zhang, Zhi-Xiang
FORESTS, 2021, 12 (12):
[30] Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species
Sun, Yin
Zou, Peishan
Jiang, Nannan
Fang, Yifu
Liu, Guofeng
FRONTIERS IN GENETICS, 2022, 12

← 1 2 3 4 5 →