Draft genome sequence of the Tibetan antelope

被引：213

作者：

Ge, Ri-Li ^{[1
,2
]}

Cai, Qingle ^{[3
]}

Shen, Yong-Yi ^{[4
,5
]}

San, A. ^{[3
]}

Ma, Lan ^{[1
,2
]}

Zhang, Yong ^{[3
]}

Yi, Xin ^{[3
]}

Chen, Yan ^{[3
]}

Yang, Lingfeng ^{[3
]}

Huang, Ying ^{[3
]}

He, Rongjun ^{[3
]}

Hui, Yuanyuan ^{[3
]}

Hao, Meirong ^{[3
]}

Li, Yue ^{[3
]}

Wang, Bo ^{[3
]}

Ou, Xiaohua ^{[3
]}

Xu, Jiaohui ^{[3
]}

Zhang, Yongfen ^{[3
]}

Wu, Kui ^{[3
]}

Geng, Chunyu ^{[3
]}

Zhou, Weiping ^{[4
]}

Zhou, Taicheng ^{[4
]}

Irwin, David M. ^{[4
,6
]}

Yang, Yingzhong ^{[1
,2
]}

Ying, Liu ^{[7
]}

Bao, Haihua ^{[7
]}

Kim, Jaebum ^{[8
,9
]}

Larkin, Denis M. ^{[10
]}

Ma, Jian ^{[8
,11
]}

Lewin, Harris A. ^{[12
]}

Xing, Jinchuan ^{[13
]}

Platt, Roy N., II ^{[14
]}

Ray, David A. ^{[14
]}

Auvil, Loretta ^{[15
]}

Capitanu, Boris ^{[15
]}

Zhang, Xiufeng ^{[16
]}

Zhang, Guojie ^{[3
]}

Murphy, Robert W. ^{[17
]}

Wang, Jun ^{[3
,18
,19
]}

Zhang, Ya-Ping ^{[4
]}

Wang, Jian ^{[3
]}

机构：

[1] Qinghai Univ, Minist Chinese Educ, Key Lab High Altitude Med, Xining 810001, Peoples R China

[2] Qinghai Univ, Res Ctr High Altitude Med, Xining 810001, Peoples R China

[3] BGI Shenzhen, Shenzhen 518083, Peoples R China

[4] Chinese Acad Sci, State Key Lab Genet Resources & Evolut, Kunming Inst Zool, Kunming 650223, Peoples R China

[5] Xiamen Univ, Sch Life Sci, State Key Lab Cellular Stress Biol, Xiamen 361005, Peoples R China

[6] Univ Toronto, Dept Lab Med & Pathobiol, Toronto, ON M5S 1A8, Canada

[7] Qinghai Univ, Affiliated Hosp, Xining 810001, Qinghai, Peoples R China

[8] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA

[9] Konkuk Univ, Dept Anim Biotechnol, Seoul 143701, South Korea

[10] Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3DA, Ceredigion, Wales

[11] Univ Illinois, Dept Bioengn, Urbana, IL 61801 USA

[12] Univ Calif Davis, Dept Ecol & Evolut, Davis, CA 95616 USA

[13] Univ Utah, Sch Med, Eccles Inst Human Genet, Salt Lake City, UT 84112 USA

[14] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Starkville, MS 39762 USA

[15] Univ Illinois, Natl Ctr Supercomp Applicat, Urbana, IL 61801 USA

[16] Gerumud Hosp, Gerumud 816000, Qinghai, Peoples R China

[17] Royal Ontario Museum, Ctr Biodivers & Conservat Biol, Toronto, ON M5S 2C6, Canada

[18] Univ Copenhagen, Dept Biol, DK-2200 Copenhagen, Denmark

[19] King Abdulaziz Univ, Jeddah 21589, Saudi Arabia

来源：

NATURE COMMUNICATIONS | 2013年 / 4卷

基金：

加拿大自然科学与工程研究理事会; 美国国家科学基金会;

关键词：

HIGH-ALTITUDE ADAPTATION; PHYLOGENETIC TREES; ALIGNMENT; EVOLUTION; MECHANISM; DATABASE; CELLS; ACID; DNA;

D O I：

10.1038/ncomms2860

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The Tibetan antelope (Pantholops hodgsonii) is endemic to the extremely inhospitable high-altitude environment of the Qinghai-Tibetan Plateau, a region that has a low partial pressure of oxygen and high ultraviolet radiation. Here we generate a draft genome of this artiodactyl and use it to detect the potential genetic bases of highland adaptation. Compared with other plain-dwelling mammals, the genome of the Tibetan antelope shows signals of adaptive evolution and gene-family expansion in genes associated with energy metabolism and oxygen transmission. Both the highland American pika, and the Tibetan antelope have signals of positive selection for genes involved in DNA repair and the production of ATPase. Genes associated with hypoxia seem to have experienced convergent evolution. Thus, our study suggests that common genetic mechanisms might have been utilized to enable high-altitude adaptation.

引用

页数：7

共 50 条

[21] Draft genome of the lined seahorse, Hippocampus erectus
Lin, Qiang
Qiu, Ying
Gu, Ruobo
Xu, Meng
Li, Jia
Bian, Chao
Zhang, Huixian
Qin, Geng
Zhang, Yanhong
Luo, Wei
Chen, Jieming
You, Xinxin
Fan, Mingjun
Sun, Min
Xu, Pao
Venkatesh, Byrappa
Xu, Junming
Fu, Hongtuo
Shi, Qiong
GIGASCIENCE, 2017, 6 (06): : gix030
[22] Assembly and annotation of a draft genome sequence for Glycine latifolia, a perennial wild relative of soybean
Liu, Qiong
Chang, Sungyul
Hartman, Glen L.
Domier, Leslie L.
PLANT JOURNAL, 2018, 95 (01) : 71 - 85
[23] Draft genome sequence of Japanese wood mouse, Apodemus speciosus
Matsunami, Masatoshi
Endo, Daiji
Saitou, Naruya
Suzuki, Hitoshi
Onuma, Manabu
DATA IN BRIEF, 2018, 16 : 43 - 46
[24] Draft genome sequence of Enterococcus faecium strain LMG 8148
Michiels, Joran E.
Van den Bergh, Bram
Fauvart, Maarten
Michiels, Jan
STANDARDS IN GENOMIC SCIENCES, 2016, 11
[25] Draft Genome Sequence of Lactobacillus casei W56
Hochwind, Kerstin
Weinmaier, Thomas
Schmid, Michael
van Hemert, Saskia
Hartmann, Anton
Rattei, Thomas
Rothballer, Michael
JOURNAL OF BACTERIOLOGY, 2012, 194 (23) : 6638 - 6638
[26] Draft genome sequence data of Haemaphysalis longicornis Oita strain
Umemiya-Shirafuji, Rika
Xuan, Xuenan
Fujisaki, Kozo
Yamagishi, Junya
DATA IN BRIEF, 2023, 49
[27] A chromosome-scale draft sequence of the Canada fleabane genome
Laforest, Martin
Martin, Sara L.
Bisaillon, Katherine
Soufiane, Brahim
Meloche, Sydney
Page, Eric
PEST MANAGEMENT SCIENCE, 2020, 76 (06) : 2158 - 2169
[28] Draft Genome Sequence of a New Zealand Isolate of Mycoplasma ovipneumoniae
Bridgeman, B. J.
Gupta, S. K.
Murray, A.
Dukkipati, V. S. R.
Altermann, E.
Wedlock, D. N.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (10):
[29] Draft Genome Sequence of the Strawberry Anthracnose Pathogen Colletotrichum fructicola
Armitage, Andrew D.
Nellist, Charlotte F.
Bates, Helen J.
Zhang, Liqing
Zou, Xiaohua
Gao, Qing-Hua
Harrison, Richard J.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2020, 9 (12):
[30] A draft genome sequence of the elusive giant squid, Architeuthis dux
da Fonseca, Rute R.
Couto, Alvarina
Machado, Andre M.
Brejova, Brona
Albertin, Carolin B.
Silva, Filipe
Gardner, Paul
Baril, Tobias
Hayward, Alex
Campos, Alexandre
Ribeiro, Angela M.
Barrio-Hernandez, Inigo
Hoving, Henk-Jan
Tafur-Jimenez, Ricardo
Chu, Chong
Frazao, Barbara
Petersen, Bent
Penaloza, Fernando
Musacchia, Francesco
Alexander, Graham C., Jr.
Osorio, Hugo
Winkelmann, Inger
Simakov, Oleg
Rasmussen, Simon
Rahman, M. Ziaur
Pisani, Davide
Vinther, Jakob
Jarvis, Erich
Zhang, Guojie
Strugnell, Jan M.
Castro, L. Filipe C.
Fedrigo, Olivier
Patricio, Mateus
Li, Qiye
Rocha, Sara
Antunes, Agostinho
Wu, Yufeng
Ma, Bin
Sanges, Remo
Vinar, Tomas
Blagoev, Blagoy
Sicheritz-Ponten, Thomas
Nielsen, Rasmus
Gilbert, M. Thomas P.
GIGASCIENCE, 2020, 9 (01):

← 1 2 3 4 5 →