Development of quantitative structure-activity relationship models for vapor pressure estimation using computed molecular descriptors

被引:22
作者
Basak, Subhash C. [1 ]
Mills, Denise [1 ]
机构
[1] Univ Minnesota, Nat Resources Res Inst, 5013 Miller Trunk Highway, Duluth, MN 55811 USA
关键词
hierarchical QSAR; ridge regression; principal components regression; partial least squares regression; topological indices; vapor pressure;
D O I
10.3998/ark.5550190.0006.a23
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Vapor pressure is an important property which is an indicator of chemical volatility, along with transport, partitioning, fate and distribution of environmental pollutants. Various models have been developed for the prediction of vapor pressure of chemicals using physicochemical and calculated structural properties. We have used different classes of graph theoretic indices, e. g., topostructural indices, topochemical indices, geometrical (3D) indices and, quantum chemical descriptors, for the development of predictive models for vapor based on a structurally diverse set of 469 chemicals. Initially, a set of 379 molecular descriptors was calculated using the software POLLY, Triplet, Sybyl, MOPAC, and Molconn-Z. Comparatively, three linear regression methodologies were used to develop hierarchical QSAR (HiQSAR) models, namely ridge regression (RR), principal components regression (PCR), and partial least squares (PLS) regression. The results indicate that, in general, RR outperforms PCR and PLS, and that the easily calculated topological descriptors are sufficient for the prediction of vapor pressure based on this large, diverse set of chemicals.
引用
收藏
页码:308 / 320
页数:13
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