TNT, a free program for phylogenetic analysis

被引：2385
作者：
Goloboff, Pablo A. [1 ]
Farris, James S. [2 ]
Nixon, Kevin C. [3 ]
机构：
[1] Inst Miguel Lillo, INSUE, CONICET, RA-4000 San Miguel De Tucuman, Argentina
[2] Nat Hist Riksmuseet, Mol Syst Lab, S-104 Stockholm, Sweden
[3] Cornell Univ, Ithaca, NY 14853 USA
来源：
CLADISTICS | 2008年 / 24卷 / 05期
关键词：
D O I：
10.1111/j.1096-0031.2008.00217.x
中图分类号：
Q [生物科学];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
The main features of the phylogeny program TNT are discussed. Windows versions have a menu interface, while Macintosh and Linux versions are command-driven. The program can analyze data sets with discrete (additive, non-additive, step-matrix) as well as continuous characters (evaluated with Farris optimization). Effective analysis of large data sets can be carried out in reasonable times, and a number of methods to help identifying wildcard taxa in the case of ambiguous data sets are implemented. A variety of methods for diagnosing trees and exploring character evolution is available in TNT, and publication-quality tree-diagrams can be saved as metafiles. Through the use of a number of native commands and a simple but powerful scripting language, TNT allows the user an enormous flexibility in phylogenetic analyses or simulations. (C) The Willi Hennig Society 2008.
引用
收藏
页码：774 / 786
页数：13
相关论文
共 34 条
  • [11] TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY
    FITCH, WM
    [J]. SYSTEMATIC ZOOLOGY, 1971, 20 (04): : 406 - &
  • [12] Giribet G., 2005, SYST BIOL, V54, P176, DOI DOI 10.1080/10635150590905830
  • [13] Goloboff, 2003, TNT TREE ANAL USING
  • [14] GOLOBOFF P, 1994, PEE WEE PARSIMONY IM
  • [15] Goloboff P., 1994, NONA TREE SEARCHING
  • [16] GOLOBOFF P, 2008, CLADISTICS IN PRESS, DOI DOI 10.1111/J.1096-0031.2007.00189.X
  • [17] Goloboff PA, 1996, CLADISTICS, V12, P199, DOI 10.1111/j.1096-0031.1996.tb00009.x
  • [18] Goloboff PA, 1999, CLADISTICS, V15, P415, DOI 10.1111/j.1096-0031.1999.tb00278.x
  • [19] ESTIMATING CHARACTER WEIGHTS DURING TREE-SEARCH
    GOLOBOFF, PA
    [J]. CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, 1993, 9 (01): : 83 - 91
  • [20] Improvements to resampling measures of group support
    Goloboff, PA
    Farris, JS
    Källersjö, M
    Oxelman, B
    Ramírez, MJ
    Szumik, CA
    [J]. CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, 2003, 19 (04): : 324 - 332
1234