Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

被引：1011

作者：

Paterson, Andrew H. ^{[1
]}

Wendel, Jonathan F. ^{[2
]}

Gundlach, Heidrun ^{[3
]}

Guo, Hui ^{[1
]}

Jenkins, Jerry ^{[4
,5
]}

Jin, Dianchuan ^{[6
,7
]}

Llewellyn, Danny ^{[8
]}

Showmaker, Kurtis C. ^{[9
]}

Shu, Shengqiang ^{[4
]}

Udall, Joshua ^{[10
]}

Yoo, Mi-jeong ^{[2
]}

Byers, Robert ^{[10
]}

Chen, Wei ^{[6
,7
]}

Doron-Faigenboim, Adi ^{[11
]}

Duke, Mary V. ^{[12
]}

Gong, Lei ^{[2
]}

Grimwood, Jane ^{[4
,5
]}

Grover, Corrinne ^{[2
]}

Grupp, Kara ^{[2
]}

Hu, Guanjing ^{[2
]}

Lee, Tae-ho ^{[1
]}

Li, Jingping ^{[1
]}

Lin, Lifeng ^{[1
]}

Liu, Tao ^{[6
,7
]}

Marler, Barry S. ^{[1
]}

Page, Justin T. ^{[10
]}

Roberts, Alison W. ^{[13
]}

Romanel, Elisson ^{[14
]}

Sanders, William S. ^{[9
]}

Szadkowski, Emmanuel ^{[2
]}

Tan, Xu ^{[1
]}

Tang, Haibao ^{[1
,15
]}

Xu, Chunming ^{[2
,16
]}

Wang, Jinpeng ^{[6
,7
]}

Wang, Zining ^{[1
]}

Zhang, Dong ^{[1
]}

Zhang, Lan ^{[6
,7
]}

Ashrafi, Hamid ^{[17
]}

Bedon, Frank ^{[8
]}

Bowers, John E. ^{[1
]}

Brubaker, Curt L. ^{[8
,18
]}

Chee, Peng W. ^{[19
]}

Das, Sayan ^{[1
]}

Gingle, Alan R. ^{[1
]}

Haigler, Candace H. ^{[20
,21
]}

Harker, David ^{[10
]}

Hoffmann, Lucia V. ^{[22
]}

Hovav, Ran ^{[11
]}

Jones, Donald C. ^{[23
]}

Lemke, Cornelia ^{[1
]}

机构：

[1] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA

[2] Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA

[3] German Res Ctr Environm Hlth GmbH, MIPS IBIS Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany

[4] Joint Genome Inst, Dept Energy, Walnut Creek, CA 94595 USA

[5] HudsonAlpha Inst Biotechnol, Huntsville, AL 35806 USA

[6] Hebei United Univ, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan 063000, Hebei, Peoples R China

[7] Hebei United Univ, Sch Sci, Tangshan 063000, Hebei, Peoples R China

[8] CSIRO Plant Ind, Canberra, ACT 2601, Australia

[9] Mississippi State Univ, Inst Genom Biocomp & Biotechnol, Mississippi State, MS 39762 USA

[10] Brigham Young Univ, Plant & Wildlife Sci Dept, Provo, UT 84602 USA

[11] Agr Res Org, Inst Plant Sci, Dept Field Crops, IL-50250 Bet Dagan, Israel

[12] USDA ARS, Jamie Whitten Delta States Res Ctr, Stoneville, MS 38776 USA

[13] Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA

[14] Univ Fed Rio de Janeiro, Dept Genet, BR-21941901 Rio De Janeiro, Brazil

[15] J Craig Venter Inst, Rockville, MD 20850 USA

[16] NE Normal Univ, Inst Cytol & Genet, Unit Plant Epigenet, Key Lab Mol Epigenet MOE, Changchun 5268, Peoples R China

[17] Univ Calif Davis, Plant Reprod Biol Extens Ctr, Davis, CA 95616 USA

[18] Bayer CropSci, B-9052 Ghent, Belgium

[19] Univ Georgia, Coastal Plain Expt Stn, Tifton, GA 31793 USA

[20] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA

[21] N Carolina State Univ, Dept Plant Biol, Raleigh, NC 27695 USA

[22] EMBRAPA, Ctr Nacl Pesquisa Algodao, BR-75375000 Santo Antonio De Goias, Go, Brazil

[23] Cotton Inc, Cary, NC 27513 USA

[24] Natl Inst Biotechnol & Genet Engn, Faisalabad 38000, Pakistan

[25] W Virginia State Univ, Dept Biol, Institute, WV 25112 USA

[26] Hebrew Univ Jerusalem, Robert H Smith Inst Plant Sci & Genet Agr, IL-76100 Rehovot, Israel

[27] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA

[28] USDA ARS, New Orleans, LA 70124 USA

[29] Univ Fed Rio de Janeiro, Dept Microbiol, BR-21941971 Rio De Janeiro, Brazil

[30] Cent Inst Cotton Res, Nagpur 440010, Maharashtra, India

[31] Texas Tech Univ, Dept Plant Sci, Lubbock, TX 79415 USA

[32] Genet Engn & Biotechnol Res Inst, Nucle Acids Dept, Alexandria 21934, Egypt

[33] Nanjing Agr Univ, Key Lab Crop Genet & Germplasm Enhancement, Nanjing 210095, Jiangsu, Peoples R China

来源：

NATURE | 2012年 / 492卷 / 7429期

基金：

美国国家科学基金会;

关键词：

DNA; SEQUENCE; RECOMBINATION; ARABIDOPSIS; PLANTS; ORGANIZATION; BARBADENSE; PATHWAYS; ANCIENT; PROTEIN;

D O I：

10.1038/nature11798

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments(1). Here we show that an abrupt five-to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago(2), conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica(3) among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A(t)D(t) (in which 't' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups.

引用

页码：423 / +

页数：6

共 42 条

[1] CONTROLLING COTTONS INSECT PESTS - A NEW SYSTEM [J].

ADKISSON, PL ;

NILES, GA ;

WALKER, JK ;

BIRD, LS ;

SCOTT, HB .

SCIENCE, 1982, 216 (4541) :19-22

[2] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[3] RNA silencing in plants [J].

Baulcombe, D .

NATURE, 2004, 431 (7006) :356-363

[4] Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].

Bowers, JE ;

Chapman, BA ;

Rong, JK ;

Paterson, AH .

NATURE, 2003, 422 (6930) :433-438

[5] The diversity of RNA silencing pathways in plants [J].

Brodersen, Peter ;

Voinnet, Olivier .

TRENDS IN GENETICS, 2006, 22 (05) :268-280

[6] PALEOCENE MALVACEAE FROM NORTHERN SOUTH AMERICA AND THEIR BIOGEOGRAPHICAL IMPLICATIONS [J].

Carvalho, Monica R. ;

Herrera, Fabiany A. ;

Jaramillo, Carlos A. ;

Wing, Scott L. ;

Callejas, Ricardo .

AMERICAN JOURNAL OF BOTANY, 2011, 98 (08) :1337-1355

[7]

Cronn R, 2003, EVOLUTION, V57, P2475, DOI 10.1111/j.0014-3820.2003.tb01493.x

[8] Plant cell walls: the skeleton of the plant world [J].

Doblin, Monika S. ;

Pettolino, Filomena ;

Bacic, Antony .

FUNCTIONAL PLANT BIOLOGY, 2010, 37 (05) :357-381

[9] Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event [J].

Fawcett, Jeffrey A. ;

Maere, Steven ;

Van de Peer, Yves .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (14) :5737-5742

[10] Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton [J].

Flagel, Lex E. ;

Wendel, Jonathan F. ;

Udall, Joshua A. .

BMC GENOMICS, 2012, 13

← 1 2 3 4 5 →