Introduction to radiomics and radiogenomics in neuro-oncology: implications and challenges

被引:28
作者
Beig, Niha [1 ]
Bera, Kaustav [1 ]
Tiwari, Pallavi [1 ,2 ]
机构
[1] Case Western Reserve Univ, Dept Biomed Engn, Cleveland Hts, OH USA
[2] Case Western Reserve Univ, Dept Biomed Engn, Iris S & Bert L Wolstein Res Bldg,2103 Cornell Rd,, Cleveland Hts, OH 44106 USA
基金
美国国家卫生研究院;
关键词
glioblastoma; machine learning; radiogenomics; radiomics; MGMT PROMOTER METHYLATION; CENTRAL-NERVOUS-SYSTEM; IMAGING PHENOTYPES; LUNG-CANCER; TUMOR SHAPE; GLIOBLASTOMA; SURVIVAL; BRAIN; MRI; PREDICTION;
D O I
10.1093/noajnl/vdaa148
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Neuro-oncology largely consists of malignancies of the brain and central nervous system including both primary as well as metastatic tumors. Currently, a significant clinical challenge in neuro-oncology is to tailor therapies for patients based on a priori knowledge of their survival outcome or treatment response to conventional or experimental therapies. Radiomics or the quantitative extraction of subvisual data from conventional radiographic imaging has recently emerged as a powerful data-driven approach to offer insights into clinically relevant questions related to diagnosis, prediction, prognosis, as well as assessing treatment response. Furthermore, radiogenomic approaches provide a mechanism to establish statistical correlations of radiomic features with point mutations and next-generation sequencing data to further leverage the potential of routine MRI scans to serve as "virtual biopsy" maps. In this review, we provide an introduction to radiomic and radiogenomic approaches in neurooncology, including a brief description of the workflow involving preprocessing, tumor segmentation, and extraction of "hand-crafted" features from the segmented region of interest, as well as identifying radiogenomic associations that could ultimately lead to the development of reliable prognostic and predictive models in neurooncology applications. Lastly, we discuss the promise of radiomics and radiogenomic approaches in personalizing treatment decisions in neuro-oncology, as well as the challenges with clinical adoption, which will rely heavily on their demonstrated resilience to nonstandardization in imaging protocols across sites and scanners, as well as in their ability to demonstrate reproducibility across large multi-institutional cohorts.
引用
收藏
页码:3 / 14
页数:12
相关论文
共 117 条
  • [91] Prediction of Molecular Mutations in Diffuse Low-Grade Gliomas using MR Imaging Features
    Shboul, Zeina A.
    Chen, James
    Iftekharuddin, Khan M.
    [J]. SCIENTIFIC REPORTS, 2020, 10 (01)
  • [92] Shen DG, 2017, ANNU REV BIOMED ENG, V19, P221, DOI [10.1146/annurev-bioeng-071516-044442, 10.1146/annurev-bioeng-071516044442]
  • [93] Radiomic features from pretreatment biparametric MRI predict prostate cancer biochemical recurrence: Preliminary findings
    Shiradkar, Rakesh
    Ghose, Soumya
    Jambor, Ivan
    Taimen, Pekka
    Ettala, Otto
    Purysko, Andrei S.
    Madabhushi, Anant
    [J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2018, 48 (06) : 1626 - 1636
  • [94] SUSAN - A new approach to low level image processing
    Smith, SM
    Brady, JM
    [J]. INTERNATIONAL JOURNAL OF COMPUTER VISION, 1997, 23 (01) : 45 - 78
  • [95] Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
    Sottoriva, Andrea
    Spiteri, Inmaculada
    Piccirillo, Sara G. M.
    Touloumis, Anestis
    Collins, V. Peter
    Marioni, John C.
    Curtis, Christina
    Watts, Colin
    Tavare, Simon
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (10) : 4009 - 4014
  • [96] Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    Subramanian, A
    Tamayo, P
    Mootha, VK
    Mukherjee, S
    Ebert, BL
    Gillette, MA
    Paulovich, A
    Pomeroy, SL
    Golub, TR
    Lander, ES
    Mesirov, JP
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (43) : 15545 - 15550
  • [97] Applied Precision Cancer Medicine in Neuro-Oncology
    Taghizadeh, H.
    Muellauer, L.
    Furtner, J.
    Hainfellner, J. A.
    Marosi, C.
    Preusser, M.
    Prager, G. W.
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [98] Radiomics and radiogenomics in lung cancer: A review for the clinician
    Thawani, Rajat
    McLane, Michael
    Beig, Niha
    Ghose, Soumya
    Prasanna, Prateek
    Velcheti, Vamsidhar
    Madabhushi, Anant
    [J]. LUNG CANCER, 2018, 115 : 34 - 41
  • [99] Expansion of the Gene Ontology knowledgebase and resources
    Carbon, S.
    Dietze, H.
    Lewis, S. E.
    Mungall, C. J.
    Munoz-Torres, M. C.
    Basu, S.
    Chisholm, R. L.
    Dodson, R. J.
    Fey, P.
    Thomas, P. D.
    Mi, H.
    Muruganujan, A.
    Huang, X.
    Poudel, S.
    Hu, J. C.
    Aleksander, S. A.
    McIntosh, B. K.
    Renfro, D. P.
    Siegele, D. A.
    Antonazzo, G.
    Attrill, H.
    Brown, N. H.
    Marygold, S. J.
    McQuilton, P.
    Ponting, L.
    Millburn, G. H.
    Rey, A. J.
    Stefancsik, R.
    Tweedie, S.
    Falls, K.
    Schroeder, A. J.
    Courtot, M.
    Osumi-Sutherland, D.
    Parkinson, H.
    Roncaglia, P.
    Lovering, R. C.
    Foulger, R. E.
    Huntley, R. P.
    Denny, P.
    Campbell, N. H.
    Kramarz, B.
    Patel, S.
    Buxton, J. L.
    Umrao, Z.
    Deng, A. T.
    Alrohaif, H.
    Mitchell, K.
    Ratnaraj, F.
    Omer, W.
    Rodriguez-Lopez, M.
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D331 - D338
  • [100] Radiomics strategy for glioma grading using texture features from multiparametric MRI
    Tian, Qiang
    Yan, Lin-Feng
    Zhang, Xi
    Zhang, Xin
    Hu, Yu-Chuan
    Han, Yu
    Liu, Zhi-Cheng
    Nan, Hai-Yan
    Sun, Qian
    Sun, Ying-Zhi
    Yang, Yang
    Yu, Ying
    Zhang, Jin
    Hu, Bo
    Xiao, Gang
    Chen, Ping
    Tian, Shuai
    Xu, Jie
    Wang, Wen
    Cui, Guang-Bin
    [J]. JOURNAL OF MAGNETIC RESONANCE IMAGING, 2018, 48 (06) : 1518 - 1528