From the topological perspective, the availability of genome-scale metabolic network models assists to the large-scale analysis of the metabolites connections, and thus, the evaluation of the cell metabolic capabilities to produce high added-value molecules. In this study, a comprehensive connectivity analysis of the published genome-scale metabolic model of Synechococcus elongatus PCC7942 (iSyf715) is presented, highlighting the most connected metabolites of this biological system. To get a suitable fit, the connectivity distribution of the metabolic model is evaluated using the cumulative distribution function (Pareto's law), verifying a power-law distribution in iSyf715 metabolic network (gamma=2.203). Additionally, through the comparison of the connectivity distributions in different microbial metabolic network models, the scale-free behavior of these metabolic networks is verified. The prediction of the metabolic network connectivity could supports the determination of the underlying functioning principles of certain cellular processes.
机构:
Natl Inst Informat & Commun Technol, Wireless Networks Res Ctr, Space Commun Lab, Tokyo 1848795, Japan
Keio Univ, Grad Sch Sci & Technol, Yokohama, Kanagawa 2238522, JapanNatl Inst Informat & Commun Technol, Wireless Networks Res Ctr, Space Commun Lab, Tokyo 1848795, Japan
Abe, Yuma
Ogura, Masaki
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机构:
Nara Inst Sci & Technol, Div Informat Sci, Ikoma 6300192, JapanNatl Inst Informat & Commun Technol, Wireless Networks Res Ctr, Space Commun Lab, Tokyo 1848795, Japan
Ogura, Masaki
Tsuji, Hiroyuki
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Natl Inst Informat & Commun Technol, Wireless Networks Res Ctr, Space Commun Lab, Tokyo 1848795, JapanNatl Inst Informat & Commun Technol, Wireless Networks Res Ctr, Space Commun Lab, Tokyo 1848795, Japan
机构:
Univ Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, SloveniaUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
Cvitanovic, Tanja
Reichert, Matthias C.
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机构:
Saarland Univ, Med Ctr, Dept Med 2, Homburg, GermanyUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
Reichert, Matthias C.
Moskon, Miha
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Univ Ljubljana, Fac Comp & Informat Sci, Ljubljana, SloveniaUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
Moskon, Miha
Mraz, Miha
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机构:
Univ Ljubljana, Fac Comp & Informat Sci, Ljubljana, SloveniaUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
Mraz, Miha
Lammert, Frank
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Saarland Univ, Med Ctr, Dept Med 2, Homburg, GermanyUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
Lammert, Frank
Rozman, Damjana
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Univ Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, SloveniaUniv Ljubljana, Inst Biochem, Ctr Funct Genom & Biochips, Fac Med, Zaloska 4, SI-1000 Ljubljana, Slovenia
机构:
Chinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Yang, Xuan
Bai, Yongqing
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Chinese Acad Sci, Airborne Remote Sensing Ctr, Aerosp Informat Res Inst, Beijing 100094, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Bai, Yongqing
Chen, Pan
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机构:
Chinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Univ Chinese Acad Sci, Beijing 100049, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Chen, Pan
Li, Cong
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机构:
Chinese Acad Sci, Airborne Remote Sensing Ctr, Aerosp Informat Res Inst, Beijing 100094, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Li, Cong
Lu, Kaixuan
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机构:
Chinese Acad Sci, Airborne Remote Sensing Ctr, Aerosp Informat Res Inst, Beijing 100094, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
Lu, Kaixuan
Chen, Zhengchao
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机构:
Chinese Acad Sci, Airborne Remote Sensing Ctr, Aerosp Informat Res Inst, Beijing 100094, Peoples R ChinaChinese Acad Sci, Aerosp Informat Res Inst, Key Lab Digital Earth Sci, Beijing 100094, Peoples R China
机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Devresse, Adrien
Dichter, Benjamin K.
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机构:
Stanford Univ, Dept Neurosurg, Stanford, CA 94305 USA
Lawrence Berkeley Natl Lab, Biol Syst & Engn, Berkeley, CA USAAllen Inst Brain Sci, Seattle, WA 98109 USA
Dichter, Benjamin K.
Gevaert, Michael
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Gevaert, Michael
King, James G.
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
King, James G.
Van Geit, Werner A. H.
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Van Geit, Werner A. H.
Povolotsky, Arseny V.
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Povolotsky, Arseny V.
Muller, Eilif
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Muller, Eilif
Courcol, Jean-Denis
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机构:
EPFL, Blue Brain Project, Campus Biotech, Geneva, SwitzerlandAllen Inst Brain Sci, Seattle, WA 98109 USA
Courcol, Jean-Denis
Arkhipov, Anton
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机构:
Allen Inst Brain Sci, Seattle, WA 98109 USAAllen Inst Brain Sci, Seattle, WA 98109 USA