Growth-dependent recombinant product formation kinetics can be reproduced through engineering of glucose transport and is prone to phenotypic heterogeneity

被引:12
作者
Carlos Fragoso-Jimenez, Juan [1 ]
Baert, Jonathan [2 ]
Thai Minh Nguyen [2 ]
Liu, Wenzheng [2 ]
Sassi, Hosni [2 ]
Goormaghtigh, Frederic [3 ]
Van Melderen, Laurence [3 ]
Gaytan, Paul [1 ]
Hernandez-Chavez, Georgina [1 ]
Martinez, Alfredo [1 ]
Delvigne, Frank [2 ]
Gosset, Guillermo [1 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Biotecnol, Dept Ingn Celular & Biocatalisis, Cuernavaca, Morelos, Mexico
[2] Univ Liege, Gembloux Agrobio Tech, Terra Res & Teaching Ctr, Microbial Proc & Interact MiPI, Gembloux, Belgium
[3] ULB, Fac Sci, Cellular & Mol Microbiol CM2, Gosselies, Belgium
关键词
Single cell; Metabolic engineering; Filamentation; Flow cytometry; Microfluidic imaging; ESCHERICHIA-COLI; FLOW-CYTOMETRY; ACETATE ACCUMULATION; PROTEIN-PRODUCTION; EXPRESSION; SYSTEM; VARIABILITY; ADAPTATION; IMPROVE;
D O I
10.1186/s12934-019-1073-5
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
BackgroundEscherichia coli W3110 and a group of six isogenic derivatives, each displaying distinct specific rates of glucose consumption were characterized to determine levels of GFP production and population heterogeneity. These strains have single or combinatory deletions in genes encoding phosphoenolpyruvate:sugar phosphotransferase system (PTS) permeases as PtsG and ManX, as well as common components EI, Hpr protein and EIIA, also the non-PTS Mgl galactose/glucose ABC transporter. They have been transformed for expressing GFP based on a lac-based expression vector, which is subject to bistability.ResultsThese strains displayed specific glucose consumption and growth rates ranging from 1.75 to 0.45g/gh and 0.54 to 0.16h(-1), respectively. The rate of acetate production was strongly reduced in all mutant strains when compared with W3110/pV21. In bioreactor cultures, wild type W3110/pV21 produced 50.51mg/L GFP, whereas strains WG/pV21 with inactive PTS IICBGlc and WGM/pV21 with the additional inactivation of PTS IIABMan showed the highest titers of GFP, corresponding to 342 and 438mg/L, respectively. Moreover, we showed experimentally that bistable expression systems, as lac-based ones, induce strong phenotypic segregation among microbial populations.ConclusionsWe have demonstrated that reduction on glucose consumption rate in E. coli leads to an improvement of GFP production. Furthermore, from the perspective of phenotypic heterogeneity, we observed in this case that heterogeneous systems are also the ones leading to the highest performance. This observation suggests reconsidering the generally accepted proposition stating that phenotypic heterogeneity is generally unwanted in bioprocess applications.
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页数:16
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共 53 条
[1]   A functional perspective on phenotypic heterogeneity in microorganisms [J].
Ackermann, Martin .
NATURE REVIEWS MICROBIOLOGY, 2015, 13 (08) :497-508
[2]   Inhibiting cell division in Escherichia coli has little if any effect on gene expression [J].
Arends, SJR ;
Weiss, DS .
JOURNAL OF BACTERIOLOGY, 2004, 186 (03) :880-884
[3]   PEDIGREES OF SOME MUTANT STRAINS OF ESCHERICHIA-COLI K-12 [J].
BACHMANN, BJ .
BACTERIOLOGICAL REVIEWS, 1972, 36 (04) :525-557
[4]   Suppressing glucose uptake and acetic acid production increases membrane protein overexpression in Escherichia coli [J].
Backlund, Emma ;
Ignatushchenko, Marina ;
Larsson, Gen .
MICROBIAL CELL FACTORIES, 2011, 10
[5]   Cell engineering of Escherichia coli allows high cell density accumulation without fed-batch process control [J].
Baecklund, Emma ;
Markland, Katrin ;
Larsson, Gen .
BIOPROCESS AND BIOSYSTEMS ENGINEERING, 2008, 31 (01) :11-20
[6]   Microbial population heterogeneity versus bioreactor heterogeneity: Evaluation of Redox Sensor Green as an exogenous metabolic biosensor [J].
Baert, Jonathan ;
Delepierre, Anissa ;
Telek, Samuel ;
Fickers, Patrick ;
Toye, Dominique ;
Delamotte, Anne ;
Lara, Alvaro R. ;
Jaen, Karim E. ;
Gosset, Guillermo ;
Jensen, Peter R. ;
Delvigne, Frank .
ENGINEERING IN LIFE SCIENCES, 2016, 16 (07) :643-651
[7]   Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law [J].
Baert, Jonathan ;
Kinet, Romain ;
Brognaux, Alison ;
Delepierre, Anissa ;
Telek, Samuel ;
Sorensen, Soren J. ;
Riber, Leise ;
Fickers, Patrick ;
Delvigne, Frank .
BIOTECHNOLOGY JOURNAL, 2015, 10 (08) :1316-1325
[8]   Homogenizing bacterial cell factories: Analysis and engineering of phenotypic heterogeneity [J].
Binder, Dennis ;
Drepper, Thomas ;
Jaeger, Karl-Erich ;
Delvigne, Frank ;
Wiechert, Wolfgang ;
Kohlheyer, Dietrich ;
Gruenberger, Alexander .
METABOLIC ENGINEERING, 2017, 42 :145-156
[9]   Comparative Single-Cell Analysis of Different E. coli Expression Systems during Microfluidic Cultivation [J].
Binder, Dennis ;
Probst, Christopher ;
Gruenberger, Alexander ;
Hilgers, Fabienne ;
Loeschcke, Anita ;
Jaeger, Karl-Erich ;
Kohlheyer, Dietrich ;
Drepper, Thomas .
PLOS ONE, 2016, 11 (08)
[10]   Single-Cell Dynamics Reveals Sustained Growth during Diauxic Shifts [J].
Boulineau, Sarah ;
Tostevin, Filipe ;
Kiviet, Daniel J. ;
ten Wolde, Pieter Rein ;
Nghe, Philippe ;
Tans, Sander J. .
PLOS ONE, 2013, 8 (04)