Development of a Simple Kinetic Mathematical Model of Aggregation of Particles or Clustering of Receptors

被引:7
作者
Dasgupta, Andrei K. Garzon [1 ,2 ]
Martyanov, Alexey A. [1 ,2 ,3 ,4 ]
Filkova, Aleksandra A. [1 ,2 ,4 ]
Panteleev, Mikhail A. [1 ,2 ,4 ,5 ]
Sveshnikova, Anastasia N. [1 ,2 ,4 ,6 ]
机构
[1] Lomonosov Moscow State Univ, Fac Phys, 1-2 Leninskie Gory, Moscow 119991, Russia
[2] Natl Med Res Ctr Pediat Hematol Oncol & Immunol, 1 Samory Mashela St, Moscow 117198, Russia
[3] Russian Acad Sci RAS, Inst Biochem Phys IBCP, Kosyigina 4, Moscow 119334, Russia
[4] Russian Acad Sci, Ctr Theoret Problems Phys Hem Pharmacol, 30 Srednyaya Kalitnikovskaya Str, Moscow 109029, Russia
[5] Moscow Inst Phys & Technol, Fac Biol & Med Phys, 9 Inst Skii, Dolgoprudnyi 141700, Russia
[6] Sechenov First Moscow State Med Univ, Dept Normal Physiol, 8-2 Trubetskaya St, Moscow 119991, Russia
来源
LIFE-BASEL | 2020年 / 10卷 / 06期
基金
俄罗斯科学基金会;
关键词
computational modeling; particle aggregation; receptor clustering; Smoluchowski coagulation; PLATELET-AGGREGATION; ACTIVATION; COLLAGEN; MECHANISM; ENZYMES; SYSTEMS; RAFTS; TIME;
D O I
10.3390/life10060097
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The process of clustering of plasma membrane receptors in response to their agonist is the first step in signal transduction. The rate of the clustering process and the size of the clusters determine further cell responses. Here we aim to demonstrate that a simple 2-differential equation mathematical model is capable of quantitative description of the kinetics of 2D or 3D cluster formation in various processes. Three mathematical models based on mass action kinetics were considered and compared with each other by their ability to describe experimental data on GPVI or CR3 receptor clustering (2D) and albumin or platelet aggregation (3D) in response to activation. The models were able to successfully describe experimental data without losing accuracy after switching between complex and simple models. However, additional restrictions on parameter values are required to match a single set of parameters for the given experimental data. The extended clustering model captured several properties of the kinetics of cluster formation, such as the existence of only three typical steady states for this system: unclustered receptors, receptor dimers, and clusters. Therefore, a simple kinetic mass-action-law-based model could be utilized to adequately describe clustering in response to activation both in 2D and in 3D.
引用
收藏
页码:1 / 16
页数:16
相关论文
共 70 条
[1]   THE COLLISIONAL LIMIT - AN IMPORTANT CONSIDERATION FOR MEMBRANE-ASSOCIATED ENZYMES AND RECEPTORS [J].
ABBOTT, AJ ;
NELSESTUEN, GL .
FASEB JOURNAL, 1988, 2 (13) :2858-2866
[2]  
Alarcon B., 2014, FRONT IMMUNOL, V5, P1
[3]  
[Anonymous], 2017, FRONTIERS PLANT SCI, DOI DOI 10.23919/FPL.2017.8056824
[4]   Population Balance Modeling of Antibodies Aggregation Kinetics [J].
Arosio, Paolo ;
Rima, Simonetta ;
Lattuada, Marco ;
Morbidelli, Massimo .
JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (24) :7066-7075
[5]  
Beer A., 1852, ANN PHYS-NEW YORK, V86, P78, DOI DOI 10.1002/ANDP.18521620505
[6]  
Bene L, 2000, CYTOMETRY, V40, P292, DOI 10.1002/1097-0320(20000801)40:4<292::AID-CYTO5>3.3.CO
[7]  
2-R
[8]   A change in the aggregation pathway of bovine serum albumin in the presence of arginine and its derivatives [J].
Borzova, Vera A. ;
Markossian, Kira A. ;
Kleymenov, Sergey Yu. ;
Kurganov, Boris I. .
SCIENTIFIC REPORTS, 2017, 7
[9]   Receptor clustering as a cellular mechanism to control sensitivity [J].
Bray, D ;
Levin, MD ;
Morton-Firth, CJ .
NATURE, 1998, 393 (6680) :85-88
[10]   Ligand detection and discrimination by spatial relocalization: A kinase-phosphatase segregation model of TCR activation [J].
Burroughs, Nigel J. ;
Lazic, Zorana ;
van der Merwe, P. Anton .
BIOPHYSICAL JOURNAL, 2006, 91 (05) :1619-1629