SOLPRO: Theory and computer program for the prediction of SOLution PROperties of rigid macromolecules and bioparticles

被引:62
作者
delaTorre, JG [1 ]
Carrasco, B [1 ]
Harding, SE [1 ]
机构
[1] UNIV NOTTINGHAM, DEPT APPL BIOCHEM & FOOD SCI, SUTTON LE12 5RD, ENGLAND
来源
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 1997年 / 25卷 / 5-6期
关键词
hydrodynamics programs; bead modelling; fluorescence; birefringence; scattering;
D O I
10.1007/s002490050049
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Single-valued hydrodynamic coefficients of a rigid particle can be calculated from existing theories and computer programs for either bead models or ellipsoids. Starting from these coefficients, we review the procedures for the calculation of complex solution properties depending on rotational diffusion, such as the decays of electric birefringence and fluorescence anisotropy. We also describe the calculation of the scattering form factor of bead models. The hydrodynamic coefficients and solution properties can be combined to give universal, shape-dependent functions, which were initially intended for ellipsoidal particles, and are extended here for the most general case. We have implemented all these developments in a new computer program, SOLPRO, for calculation of SOLution PROperties, which can be linked to existing software for bead models or ellipsoids.
引用
收藏
页码:361 / 372
页数:12
相关论文
共 49 条
[11]   POLARIZED FLUORESCENCE AND ROTATIONAL BROWNIAN MOTION [J].
EHRENBER.M ;
RIGLER, R .
CHEMICAL PHYSICS LETTERS, 1972, 14 (05) :539-&
[12]   THEORY OF THE ROTATIONAL BROWNIAN MOTION OF A FREE RIGID BODY [J].
FAVRO, LD .
PHYSICAL REVIEW, 1960, 119 (01) :53-62
[13]  
Flory P J., PRINCIPLES POLYM CHE
[14]  
Garcia Bernal J.M., 1977, Biopolymers, V16, P1747, DOI DOI 10.1002/BIP.1977.360160811
[15]   Transient orientation and electrooptical properties of axially symmetric macromolecules in an electric field of arbitrary strength [J].
Gomez, BC ;
Belmonte, AP ;
Martinez, MCL ;
delaTorre, JG .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (23) :9900-9905
[16]   THE SOLUTION CONFORMATIONS OF THE SUBCLASSES OF HUMAN-IGG DEDUCED FROM SEDIMENTATION AND SMALL-ANGLE X-RAY-SCATTERING STUDIES [J].
GREGORY, L ;
DAVIS, KG ;
SHETH, B ;
BOYD, J ;
JEFFERIS, R ;
NAVE, C ;
BURTON, DR .
MOLECULAR IMMUNOLOGY, 1987, 24 (08) :821-829
[17]   MODELING BIOLOGICAL MACROMOLECULES IN SOLUTION .2. THE GENERAL TRIAXIAL ELLIPSOID [J].
HARDING, SE ;
ROWE, AJ .
BIOPOLYMERS, 1983, 22 (07) :1813-1829
[19]   MODELING BIOLOGICAL MACROMOLECULES IN SOLUTION .3. THE LAMBDA-R INTERSECTION METHOD FOR TRIAXIAL ELLIPSOIDS [J].
HARDING, SE ;
ROWE, AJ .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 1982, 4 (06) :357-361