Advances in NMR Spectroscopy of Weakly Aligned Biomolecular Systems

被引:25
作者
Chiliveri, Sai Chaitanya [1 ]
Robertson, Angus J. [1 ]
Shen, Yang [1 ]
Torchia, Dennis A. [1 ]
Bax, Ad [1 ]
机构
[1] Natl Inst Hlth, Natl Inst Diabet & Digest & Kidney Dis, Chem Phys Lab, Bethesda, MD 20892 USA
关键词
RESIDUAL DIPOLAR COUPLINGS; LIQUID-CRYSTALLINE MEDIUM; HIGH-RESOLUTION NMR; PROTEIN-STRUCTURE DETERMINATION; ORIENTED PHOSPHOLIPID MICELLES; MAGNETIC-FIELD DEPENDENCE; MODEL-FREE ANALYSIS; ONE-BOND; X-RAY; BIOLOGICAL MACROMOLECULES;
D O I
10.1021/acs.chemrev.1c00730
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The measurement and application of residual dipolar couplings (RDCs) in solution NMR studies of biological macromolecules has become well established over the past quarter of a century. Numerous methods for generating the requisite anisotropic orientational molecular distribution have been demonstrated, each with its specific strengths and weaknesses. In parallel, an enormous number of pulse schemes have been introduced to measure the many different types of RDCs, ranging from the most widely measured backbone amide N-15-H-1 RDCs, to H-1-H-1 RDCs and couplings between low-gamma nuclei. Applications of RDCs range from structure validation and refinement to the determination of relative domain orientations, the measurement of backbone and domain motions, and de novo structure determination. Nevertheless, it appears that the power of the RDC methodology remains underutilized. This review aims to highlight the practical aspects of sample preparation and RDC measurement while describing some of the most straightforward applications that take advantage of the exceptionally precise information contained in such data. Some emphasis will be placed on more recent developments that enable the accurate measurement of RDCs in larger systems, which is key to the ongoing shift in focus of biological NMR spectroscopy from structure determination toward gaining improved understanding of how molecular flexibility drives protein function.
引用
收藏
页码:9307 / 9330
页数:24
相关论文
共 230 条
[1]   The structure of ethylbenzene as a solute in liquid crystalline solvents via analysis of proton NMR spectra [J].
Algieri, C ;
Castiglione, F ;
Celebre, G ;
De Luca, G ;
Longeri, M ;
Emsley, JW .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2000, 2 (15) :3405-3413
[2]   Lanthanide-tagged proteins - an illuminating partnership [J].
Allen, Karen N. ;
Imperiali, Barbara .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2010, 14 (02) :247-254
[3]  
[Anonymous], 1986, NMR of Proteins and Nucleic Acids
[4]   Accurate prediction of protein structures and interactions using a three-track neural network [J].
Baek, Minkyung ;
DiMaio, Frank ;
Anishchenko, Ivan ;
Dauparas, Justas ;
Ovchinnikov, Sergey ;
Lee, Gyu Rie ;
Wang, Jue ;
Cong, Qian ;
Kinch, Lisa N. ;
Schaeffer, R. Dustin ;
Millan, Claudia ;
Park, Hahnbeom ;
Adams, Carson ;
Glassman, Caleb R. ;
DeGiovanni, Andy ;
Pereira, Jose H. ;
Rodrigues, Andria V. ;
van Dijk, Alberdina A. ;
Ebrecht, Ana C. ;
Opperman, Diederik J. ;
Sagmeister, Theo ;
Buhlheller, Christoph ;
Pavkov-Keller, Tea ;
Rathinaswamy, Manoj K. ;
Dalwadi, Udit ;
Yip, Calvin K. ;
Burke, John E. ;
Garcia, K. Christopher ;
Grishin, Nick V. ;
Adams, Paul D. ;
Read, Randy J. ;
Baker, David .
SCIENCE, 2021, 373 (6557) :871-+
[5]   Measurement of Methyl Axis Orientations in Invisible, Excited States of Proteins by Relaxation Dispersion NMR Spectroscopy [J].
Baldwin, Andrew J. ;
Hansen, D. Flemming ;
Vallurupalli, Pramodh ;
Kay, Lewis E. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (33) :11939-11948
[6]  
Banci L, 1997, PROTEINS, V29, P68, DOI 10.1002/(SICI)1097-0134(199709)29:1<68::AID-PROT5>3.0.CO
[7]  
2-B
[8]   Remarkable Rigidity of the Single α-Helical Domain of Myosin-VI As Revealed by NMR Spectroscopy [J].
Barnes, C. Ashley ;
Shen, Yang ;
Ying, Jinfa ;
Takagi, Yasuharu ;
Torchia, Dennis A. ;
Sellers, James R. ;
Bax, Ad .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2019, 141 (22) :9004-9017
[9]   Characterization of surfactant liquid crystal phases suitable for molecular alignment and measurement of dipolar couplings [J].
Barrientos, LG ;
Dolan, C ;
Gronenborn, AM .
JOURNAL OF BIOMOLECULAR NMR, 2000, 16 (04) :329-337
[10]   Characterization of the cholesteric phase of filamentous bacteriophage fd for molecular alignment [J].
Barrientos, LG ;
Louis, JM ;
Gronenborn, AM .
JOURNAL OF MAGNETIC RESONANCE, 2001, 149 (01) :154-158