Inferring change points in the spread of COVID-19 reveals the effectiveness of interventions

被引:516
作者
Dehning, Jonas
Zierenberg, Johannes
Spitzner, F. Paul
Wibral, Michael
Pinheiro Neto, Joao
Wilczek, Michael
Priesemann, Viola
机构
[1] Max Planck Institute for Dynamics and Self-Organization, Göttingen
[2] Campus Institute for Dynamics of Biological Networks, University of Göttingen, Göttingen
[3] Institute for the Dynamics of Complex Systems, University of Göttingen, Göttingen
[4] Bernstein Center for Computational Neuroscience, Göttingen
关键词
EPIDEMICS; DEATH; MODEL;
D O I
10.1126/science.abb9789
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
As coronavirus disease 2019 (COVID-19) is rapidly spreading across the globe, short-term modeling forecasts provide time-critical information for decisions on containment and mitigation strategies. A major challenge for short-term forecasts is the assessment of key epidemiological parameters and how they change when first interventions show an effect. By combining an established epidemiological model with Bayesian inference, we analyzed the time dependence of the effective growth rate of new infections. Focusing on COVID-19 spread in Germany, we detected change points in the effective growth rate that correlate well with the times of publicly announced interventions. Thereby, we could quantify the effect of interventions and incorporate the corresponding change points into forecasts of future scenarios and case numbers. Our code is freely available and can be readily adapted to any country or region.
引用
收藏
页码:160 / +
页数:21
相关论文
共 47 条
[1]   How will country-based mitigation measures influence the course of the COVID-19 epidemic? [J].
Anderson, Roy M. ;
Heesterbeek, Hans ;
Klinkenberg, Don ;
Hollingsworth, T. Deirdre .
LANCET, 2020, 395 (10228) :931-934
[2]  
Andersson H., 2000, Lecture Notes in Statistics, DOI DOI 10.1007/978-1-4612-1158-7
[3]  
Arenas A., 2020, Phys. Rev. X, DOI DOI 10.1101/2020.03.21.20040022
[4]  
Bittihn P., 2020, ARXIV200308784
[5]  
Bjornstad ON, 2002, ECOL MONOGR, V72, P169, DOI 10.1890/0012-9615(2002)072[0169:DOMEES]2.0.CO
[6]  
2
[7]  
Bock W., 2020, MITIGATION HERD IMMU, DOI DOI 10.1101/2020.03.25.20043109
[8]   Bayesian inference for stochastic epidemics in populations with random social structure [J].
Britton, T ;
O'Neill, PD .
SCANDINAVIAN JOURNAL OF STATISTICS, 2002, 29 (03) :375-390
[9]  
Chang S. L., 2020, ARXIV200310218QBIOPE
[10]  
Chen YC, 2020, ARXIV200300122QBIOPE