Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin

被引:40
作者
Lerch, Michael T. [1 ,2 ]
Horwitz, Joseph [1 ]
McCoy, John [1 ]
Hubbell, Wayne L. [1 ,2 ]
机构
[1] Univ Calif Los Angeles, Jules Stein Eye Inst, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
基金
美国国家卫生研究院;
关键词
HIGH HYDROSTATIC-PRESSURE; SPERM WHALE MYOGLOBIN; MOLTEN GLOBULE STATE; T4; LYSOZYME; CONFORMATIONAL FLUCTUATION; INDUCED DENATURATION; BETA-LACTOGLOBULIN; CRYSTAL-STRUCTURES; PROTEIN-STRUCTURE; ENERGY LANDSCAPE;
D O I
10.1073/pnas.1320124110
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Excited states of proteins may play important roles in function, yet are difficult to study spectroscopically because of their sparse population. High hydrostatic pressure increases the equilibrium population of excited states, enabling their characterization [Akasaka K (2003) Biochemistry 42: 10875-85]. High-pressure site-directed spin-labeling EPR (SDSL-EPR) was developed recently to map the site-specific structure and dynamics of excited states populated by pressure. To monitor global secondary structure content by circular dichroism (CD) at high pressure, a modified optical cell using a custom MgF2 window with a reduced aperture is introduced. Here, a combination of SDSL-EPR and CD is used to map reversible structural transitions in holomyoglobin and apomyoglobin (apoMb) as a function of applied pressure up to 2 kbar. CD shows that the high-pressure excited state of apoMb at pH 6 has helical content identical to that of native apoMb, but reversible changes reflecting the appearance of a conformational ensemble are observed by SDSL-EPR, suggesting a helical topology that fluctuates slowly on the EPR time scale. Although the high-pressure state of apoMb at pH 6 has been referred to as a molten globule, the data presented here reveal significant differences from the well-characterized pH 4.1 molten globule of apoMb. Pressure-populated states of both holomyoglobin and apoMb at pH 4.1 have significantly less helical structure, and for the latter, that may correspond to a transient folding intermediate.
引用
收藏
页码:E4714 / E4722
页数:9
相关论文
共 78 条
[1]   Probing conformational fluctuation of proteins by pressure perturbation [J].
Akasaka, Kazuyuki .
CHEMICAL REVIEWS, 2006, 106 (05) :1814-1835
[2]   Exploring the folding energy landscape with pressure [J].
Akasaka, Kazuyuki ;
Kitahara, Ryo ;
Kamatari, Yuji O. .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2013, 531 (1-2) :110-115
[3]   STRUCTURAL STUDIES ON TRANSMEMBRANE PROTEINS .2. SPIN LABELING OF BACTERIORHODOPSIN MUTANTS AT UNIQUE CYSTEINES [J].
ALTENBACH, C ;
FLITSCH, SL ;
KHORANA, HG ;
HUBBELL, WL .
BIOCHEMISTRY, 1989, 28 (19) :7806-7812
[4]   NMR spectroscopy brings invisible protein states into focus [J].
Baldwin, Andrew J. ;
Kay, Lewis E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :808-814
[5]   Molten globules, entropy-driven conformational change and protein folding [J].
Baldwin, Robert L. ;
Rose, George D. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2013, 23 (01) :4-10
[6]   3-STATE ANALYSIS OF SPERM WHALE APOMYOGLOBIN FOLDING [J].
BARRICK, D ;
BALDWIN, RL .
BIOCHEMISTRY, 1993, 32 (14) :3790-3796
[7]   Mapping α-helical induced folding within the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy [J].
Belle, Valerie ;
Rouger, Sabrina ;
Costanzo, Stephanie ;
Liquiere, Elodie ;
Strancar, Janez ;
Guigliarelli, Bruno ;
Fournel, Andre ;
Longhi, Sonia .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 73 (04) :973-988
[8]   Packing in molten globules and native states [J].
Bhattacharyya, Sanchari ;
Varadarajan, Raghavan .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2013, 23 (01) :11-21
[9]   Pressure-induced perturbation of apomyoglobin structure: Fluorescence studies on native and acidic compact forms [J].
Bismuto, E ;
Sirangelo, I ;
Irace, G ;
Gratton, E .
BIOCHEMISTRY, 1996, 35 (04) :1173-1178
[10]   The role of dynamic conformational ensembles in biomolecular recognition [J].
Boehr, David D. ;
Nussinov, Ruth ;
Wright, Peter E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :789-796