Analysis of the small chromosomal Prionium serratum (Cyperid) demonstrates the importance of reliable methods to differentiate between mono- and holocentricity

被引:10
作者
Baez, M. [1 ,2 ]
Kuo, Y. T. [1 ]
Dias, Y. [1 ,2 ]
Souza, T. [1 ,3 ]
Boudichevskaia, A. [1 ,4 ]
Fuchs, J. [1 ]
Schubert, V. [1 ]
Vanzela, A. L. L. [3 ]
Pedrosa-Harand, A. [2 ]
Houben, A. [1 ]
机构
[1] Leibniz Inst Plant Genet & Crop Plant Res IPK, D-06466 Gatersleben, Stadt Seeland, Germany
[2] Univ Fed Pernambuco, Dept Bot, Lab Plant Cytogenet & Evolut, Recife, PE, Brazil
[3] Univ Estadual Londrina, Dept Gen Biol, Ctr Biol Sci, Lab Cytogenet & Plant Divers, BR-86057970 Londrina, Parana, Brazil
[4] KWS SAAT SE & Co KGaA, D-37574 Einbeck, Germany
关键词
CENH3; CENPA; Centromere type; Holocentric chromosome; Evolution; Cyperids; Thurniceae; CENTROMERIC SUBSTRUCTURES; DNA-REPLICATION; CD-HIT; PLANTS; ELEMENTS; DISTINCT; MEIOSIS; ULTRASTRUCTURE; ORGANIZATION; KINETOCHORE;
D O I
10.1007/s00412-020-00745-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
For a long time, the Cyperid clade (Thurniceae-Juncaceae-Cyperaceae) was considered a group of species possessing holocentromeres exclusively. The basal phylogenetic position of Prionium serratum (Thunb.) Drege (Thurniceae) within Cyperids makes this species an important specimen to understand the centromere evolution within this clade. In contrast to the expectation, the chromosomal distribution of the centromere-specific histone H3 (CENH3), alpha-tubulin and different centromere-associated post-translational histone modifications (H3S10ph, H3S28ph and H2AT120ph) demonstrate a monocentromeric organisation of P. serratum chromosomes. Analysis of the high-copy repeat composition resulted in the identification of two centromere-localised satellite repeats. Hence, monocentricity was the ancestral condition for the Juncaceae-Cyperaceae-Thurniaceae Cyperid clade, and holocentricity in this clade has independently arisen at least twice after differentiation of the three families, once in Juncaceae and the other one in Cyperaceae. In this context, methods suitable for the identification of holocentromeres are discussed.
引用
收藏
页码:285 / 297
页数:13
相关论文
共 82 条
[1]   Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H [J].
Aliyeva-Schnorr, Lala ;
Beier, Sebastian ;
Karafiatova, Miroslava ;
Schmutzer, Thomas ;
Scholz, Uwe ;
Dolezel, Jaroslav ;
Stein, Nils ;
Houben, Andreas .
PLANT JOURNAL, 2015, 84 (02) :385-394
[2]   Epigenetic regulation of centromeric chromatin: old dogs, new tricks? [J].
Allshire, Robin C. ;
Karpen, Gary H. .
NATURE REVIEWS GENETICS, 2008, 9 (12) :923-937
[3]   Together But Different: The Subgenomes of the Bimodal Eleutherine Karyotypes Are Differentially Organized [J].
Baez, Mariana ;
Vaio, Magdalena ;
Dreissig, Steven ;
Schubert, Veit ;
Houben, Andreas ;
Pedrosa-Harand, Andrea .
FRONTIERS IN PLANT SCIENCE, 2019, 10
[4]   Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei [J].
Bass, Hank W. ;
Hoffman, Gregg G. ;
Lee, Tae-Jin ;
Wear, Emily E. ;
Joseph, Stacey R. ;
Allen, George C. ;
Hanley-Bowdoin, Linda ;
Thompson, William F. .
PLANT MOLECULAR BIOLOGY, 2015, 89 (4-5) :339-351
[5]   THE ULTRASTRUCTURE OF THE DIFFUSE KINETOCHORE IN LUZULA-NIVEA [J].
BOKHARI, FS ;
GODWARD, MBE .
CHROMOSOMA, 1980, 79 (01) :125-136
[6]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[7]   THE ULTRASTRUCTURE OF MEIOTIC KINETOCHORES OF LUZULA [J].
BRASELTON, JP .
CHROMOSOMA, 1981, 82 (01) :143-151
[8]  
Bures P, 2012, PLANT GENOME DIVERSI, V1
[9]   Chiasmatic and achiasmatic inverted meiosis of plants with holocentric chromosomes [J].
Cabral, Gabriela ;
Marques, Andre ;
Schubert, Veit ;
Pedrosa-Harand, Andrea ;
Schloegelhofer, Peter .
NATURE COMMUNICATIONS, 2014, 5
[10]   Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon [J].
Cheng, ZK ;
Dong, FG ;
Langdon, T ;
Shu, OY ;
Buell, CR ;
Gu, MH ;
Blattner, FR ;
Jiang, JM .
PLANT CELL, 2002, 14 (08) :1691-1704