Identification and characterization of human testis derived circular RNAs and their existence in seminal plasma

被引:108
作者
Dong, Wei-Wei [1 ]
Li, Hui-Min [1 ]
Qing, Xing-Rong [1 ]
Huang, Dong-Hui [1 ,2 ]
Li, Hong-Gang [1 ,2 ]
机构
[1] Huazhong Univ Sci & Technol, Tongji Med Coll, Ctr Reprod Med, Family Planning Res Inst, Wuhan 430030, Peoples R China
[2] Wuhan Tongji Reprod Med Hosp, Wuhan 430030, Peoples R China
基金
中国国家自然科学基金;
关键词
NONCODING RNAS; MICRORNA; SPERMATOGENESIS; EXPRESSION; ABUNDANT; RECOVERY; REVEALS; CANCER; GENES; DNA;
D O I
10.1038/srep39080
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Circular RNAs (circRNAs) have emerged as novel molecules of interest in gene regulation as other noncoding RNAs. Though they have been explored in some species and tissues, the expression and functions of circRNAs in human reproductive systems remain unknown. Here we revealed the expression profiles of circRNAs in human testis tissue using high-throughput sequencing. The conformation of these testis-derived circRNAs in seminal plasma was also investigated, aiming to provide a non-invasive liquid biopsy surrogate for testicular biopsy. We predicted >15,000 circRNAs in human testis, with most of them (10,792; 67%) new. In all the 5,928 circRNA forming genes, 1,017 are first reported by us to generate circRNAs. Interestingly, these genes are mostly related to spermatogenesis, sperm motility, fertilization, etc. The sequence feature, chromosome location, alternative splicing and other characteristics of the circRNAs in human testis were also explored. Moreover, we found that these testis-derived circRNAs could be stably detected in seminal plasma. Most of them were probably bound with proteins in seminal plasma and were very stable at room temperature. Our work has laid the foundations to decipher regulation mechanisms of circRNAs in spermatogenesis and to develop circRNAs as novel noninvasive biomarkers for male infertile diseases.
引用
收藏
页数:11
相关论文
共 56 条
[1]   Rolling Circle Translation of Circular RNA in Living Human Cells [J].
Abe, Naoko ;
Matsumoto, Ken ;
Nishihara, Mizuki ;
Nakano, Yukiko ;
Shibata, Aya ;
Maruyama, Hideto ;
Shuto, Satoshi ;
Matsuda, Akira ;
Yoshida, Minoru ;
Ito, Yoshihiro ;
Abe, Hiroshi .
SCIENTIFIC REPORTS, 2015, 5
[2]   The Landscape of MicroRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva [J].
Bahn, Jae Hoon ;
Zhang, Qing ;
Li, Feng ;
Chan, Tak-Ming ;
Lin, Xianzhi ;
Kim, Yong ;
Wong, David T. W. ;
Xiao, Xinshu .
CLINICAL CHEMISTRY, 2015, 61 (01) :221-230
[3]   microRNA signature is altered in both human epididymis and seminal microvesicles following vasectomy [J].
Belleannee, Clemence ;
Legare, Christine ;
Calvo, Ezequiel ;
Thimon, Veronique ;
Sullivan, Robert .
HUMAN REPRODUCTION, 2013, 28 (06) :1455-1467
[4]   Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk [J].
Burd, Christin E. ;
Jeck, William R. ;
Liu, Yan ;
Sanoff, Hanna K. ;
Wang, Zefeng ;
Sharpless, Norman E. .
PLOS GENETICS, 2010, 6 (12) :1-15
[5]   The RNA Binding Protein Quaking Regulates Formation of circRNAs [J].
Conn, Simon J. ;
Pillman, Katherine A. ;
Toubia, John ;
Conn, Vanessa M. ;
Salmanidis, Marika ;
Phillips, Caroline A. ;
Roslan, Suraya ;
Schreiber, Andreas W. ;
Gregory, Philip A. ;
Goodall, Gregory J. .
CELL, 2015, 160 (06) :1125-1134
[6]   Homozygous mutation in SPATA16 is associated with male infertility in human globozoospermia [J].
Dam, Anika H. D. M. ;
Koscinski, Isabelle ;
Kremer, Jan A. M. ;
Moutou, Celine ;
Jaeger, Anne-Sophie ;
Oudakker, Astrid R. ;
Tournaye, Herman ;
Charlet, Nicolas ;
lagier-Tourenne, Clotilde ;
van Bokhoven, Hans ;
Viville, Stephane .
AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 81 (04) :813-820
[7]   Regulation of spermatogenesis by small non-coding RNAs: Role of the germ granule [J].
de Mateo, Sara ;
Sassone-Corsi, Paolo .
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2014, 29 :84-92
[8]   Male germ cell gene expression [J].
Eddy, EM .
RECENT PROGRESS IN HORMONE RESEARCH, VOL 57: REPRODUCTIVE HORMONES & HUMAN HEALTH, 2002, 57 :103-128
[9]   microRNA in Human Reproduction [J].
Eisenberg, Iris ;
Kotaja, Noora ;
Goldman-Wohl, Debra ;
Imbar, Tal .
MICRORNA: MEDICAL EVIDENCE: FROM MOLECULAR BIOLOGY TO CLINICAL PRACTICE, 2015, 888 :353-387
[10]   Bromodomain-dependent stage-specific male genome programming by Brdt [J].
Gaucher, Jonathan ;
Boussouar, Faycal ;
Montellier, Emilie ;
Curtet, Sandrine ;
Buchou, Thierry ;
Bertrand, Sarah ;
Hery, Patrick ;
Jounier, Sylvie ;
Depaux, Arnaud ;
Vitte, Anne-Laure ;
Guardiola, Philippe ;
Pernet, Karin ;
Debernardi, Alexandra ;
Lopez, Fabrice ;
Holota, Helene ;
Imbert, Jean ;
Wolgemuth, Debra J. ;
Gerard, Matthieu ;
Rousseaux, Sophie ;
Khochbin, Saadi .
EMBO JOURNAL, 2012, 31 (19) :3809-3820