Big data in epilepsy: Clinical and research considerations. Report from the Epilepsy Big Data Task Force of the International League Against Epilepsy

被引:32
作者
Lhatoo, Samden D. [1 ]
Bernasconi, Neda [2 ]
Blumcke, Ingmar [3 ]
Braun, Kees [4 ]
Buchhalter, Jeffrey [5 ]
Denaxas, Spiros [6 ]
Galanopoulou, Aristea [7 ]
Josephson, Colin [8 ]
Kobow, Katja [3 ]
Lowenstein, Daniel [9 ]
Ryvlin, Philippe [10 ]
Schulze-Bonhage, Andreas [11 ]
Sahoo, Satya S. [1 ]
Thom, Maria [12 ]
Thurman, David [13 ]
Worrell, Greg [14 ]
Zhang, Guo-Qiang [1 ]
Wiebe, Samuel [8 ]
机构
[1] Univ Texas Hlth Sci Ctr Houston, Houston, TX 77030 USA
[2] McGill Univ, Montreal Neurol Inst & Hosp, Neuroimaging Epilepsy Lab, Montreal, PQ, Canada
[3] Friedrich Alexander Univ Erlangen Nurnberg, Univ Hosp Erlangen, Erlangen, Germany
[4] Univ Med Ctr Utrecht, Brain Ctr Rudolf Magnus, Dept Child Neurol, Utrecht, Netherlands
[5] St Josephs Hosp, Dept Neurol, Phoenix, AZ USA
[6] UCL, Inst Hlth Informat, London, England
[7] Albert Einstein Coll Med, Saul Korey Dept Neurol, Dominick P Purpura Dept Neurosci, Bronx, NY 10467 USA
[8] Univ Calgary, Dept Clin Neurosci, Calgary, AB, Canada
[9] Univ Calif San Francisco, Dept Neurol, San Francisco, CA USA
[10] Univ Lausanne, Dept Neurosci, Lausanne, Switzerland
[11] Univ Hosp Freiberg, Epilepsy Ctr, Freiberg, Germany
[12] UCL, Inst Neurol, London, England
[13] Emory Univ, Atlanta, GA 30322 USA
[14] Mayo Clin, Dept Neurol, Rochester, MN USA
关键词
big data; epilepsy; epilepsy informatics; epilepsy ontology; SEIZURE-DETECTION SYSTEMS; DRUG-RESISTANT EPILEPSY; METHODOLOGICAL STANDARDS; COMMON EPILEPSIES; LONG-TERM; CONSENSUS CLASSIFICATION; CONTROL RODENTS; GENERAL-PRACTICE; ILAE COMMISSION; BRAIN-TISSUE;
D O I
10.1111/epi.16633
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Epilepsy is a heterogeneous condition with disparate etiologies and phenotypic and genotypic characteristics. Clinical and research aspects are accordingly varied, ranging from epidemiological to molecular, spanning clinical trials and outcomes, gene and drug discovery, imaging, electroencephalography, pathology, epilepsy surgery, digital technologies, and numerous others. Epilepsy data are collected in the terabytes and petabytes, pushing the limits of current capabilities. Modern computing firepower and advances in machine and deep learning, pioneered in other diseases, open up exciting possibilities for epilepsy too. However, without carefully designed approaches to acquiring, standardizing, curating, and making available such data, there is a risk of failure. Thus, careful construction of relevant ontologies, with intimate stakeholder inputs, provides the requisite scaffolding for more ambitious big data undertakings, such as an epilepsy data commons. In this review, we assess the clinical and research epilepsy landscapes in the big data arena, current challenges, and future directions, and make the case for a systematic approach to epilepsy big data.
引用
收藏
页码:1869 / 1883
页数:15
相关论文
共 127 条
  • [1] Methods for Measuring Seizure Frequency and Severity
    Aghaei-Lasboo, Anahita
    Fisher, Robert S.
    [J]. NEUROLOGIC CLINICS, 2016, 34 (02) : 383 - +
  • [2] Ultra-rare genetic variation in common epilepsies: a case-control sequencing study
    Allen, Andrew S.
    Bellows, Susannah T.
    Berkovic, Samuel F.
    Bridgers, Joshua
    Burgess, Rosemary
    Cavalleri, Gianpiero
    Chung, Seo-Kyung
    Cossette, Patrick
    Delanty, Norman
    Dlugos, Dennis
    Epstein, Michael P.
    Freyer, Catharine
    Goldstein, David B.
    Heinzen, Erin L.
    Hildebrand, Michael S.
    Johnson, Michael R.
    Kuzniecky, Ruben
    Lowenstein, Daniel H.
    Marson, Anthony G.
    Mayeux, Richard
    Mebane, Caroline
    Mefford, Heather C.
    O'Brien, Terence J.
    Ottman, Ruth
    Petrou, Steven
    Petrovski, Slave
    Pickrell, William O.
    Poduri, Annapurna
    Radtke, Rodney A.
    Rees, Mark I.
    Regan, Brigid M.
    Ren, Zhong
    Scheffer, Ingrid E.
    Sills, Graeme J.
    Thomas, Rhys H.
    Wang, Quanli
    Abou-Khalil, Bassel
    Alldredge, Brian K.
    Amrom, Dina
    Andermann, Eva
    Andermann, Frederick
    Bautista, Jocelyn F.
    Berkovic, Samuel F.
    Bluvstein, Judith
    Boro, Alex
    Cascino, Gregory D.
    Consalvo, Damian
    Crumrine, Patricia
    Devinsky, Orrin
    Dlugos, Dennis
    [J]. LANCET NEUROLOGY, 2017, 16 (02) : 135 - 143
  • [3] De novo mutations in epileptic encephalopathies
    Allen, Andrew S.
    Berkovic, Samuel F.
    Cossette, Patrick
    Delanty, Norman
    Dlugos, Dennis
    Eichler, Evan E.
    Epstein, Michael P.
    Glauser, Tracy
    Goldstein, David B.
    Han, Yujun
    Heinzen, Erin L.
    Hitomi, Yuki
    Howell, Katherine B.
    Johnson, Michael R.
    Kuzniecky, Ruben
    Lowenstein, Daniel H.
    Lu, Yi-Fan
    Madou, Maura R. Z.
    Marson, Anthony G.
    Mefford, Heather C.
    Nieh, Sahar Esmaeeli
    O'Brien, Terence J.
    Ottman, Ruth
    Petrovski, Slave
    Poduri, Annapurna
    Ruzzo, Elizabeth K.
    Scheffer, Ingrid E.
    Sherr, Elliott H.
    Yuskaitis, Christopher J.
    Abou-Khalil, Bassel
    Alldredge, Brian K.
    Bautista, Jocelyn F.
    Berkovic, Samuel F.
    Boro, Alex
    Cascino, Gregory D.
    Consalvo, Damian
    Crumrine, Patricia
    Devinsky, Orrin
    Dlugos, Dennis
    Epstein, Michael P.
    Fiol, Miguel
    Fountain, Nathan B.
    French, Jacqueline
    Friedman, Daniel
    Geller, Eric B.
    Glauser, Tracy
    Glynn, Simon
    Haut, Sheryl R.
    Hayward, Jean
    Helmers, Sandra L.
    [J]. NATURE, 2013, 501 (7466) : 217 - +
  • [5] Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies
    Anney, Richard J. L.
    Avbersek, Andreja
    Balding, David
    Baum, Larry
    Becker, Felicitas
    Berkovic, Samuel F.
    Bradfield, Jonathan P.
    Brody, Lawrence C.
    Buono, Russell J.
    Catarino, Claudia B.
    Cavalleri, Gianpiero L.
    Cherny, Stacey S.
    Chinthapalli, Krishna
    Coffey, Alison J.
    Compston, Alastair
    Cossette, Patrick
    de Haan, Gerrit-Jan
    De Jonghe, Peter
    de Kovel, Carolien G. F.
    Delanty, Norman
    Depondt, Chantal
    Dlugos, Dennis J.
    Doherty, Colin P.
    Elger, Christian E.
    Ferraro, Thomas N.
    Feucht, Martha
    Franke, Andre
    French, Jacqueline
    Gaus, Verena
    Goldstein, David B.
    Gui, Hongsheng
    Guo, Youling
    Hakonarson, Hakon
    Hallmann, Kerstin
    Heinzen, Erin L.
    Helbig, Ingo
    Hjalgrim, Helle
    Jackson, Margaret
    Jamnadas-Khoda, Jennifer
    Janz, Dieter
    Johnson, Michael R.
    Kaelviaeinen, Reetta
    Kantanen, Anne-Mari
    Kasperaviciute, Dalia
    Trenite, Dorothee Kasteleijn-Nolst
    Koeleman, Bobby P. C.
    Kunz, Wolfram S.
    Kwan, Patrick
    Lau, Yu Lung
    Lehesjoki, Anna-Elina
    [J]. LANCET NEUROLOGY, 2014, 13 (09) : 893 - 903
  • [6] EURAP signals a new era in epilepsy research
    不详
    [J]. LANCET NEUROLOGY, 2011, 10 (07) : 591 - 591
  • [7] Suicide-Related Events in Patients Treated with Antiepileptic Drugs
    Arana, Alejandro
    Wentworth, Charles E.
    Ayuso-Mateos, Jose L.
    Arellano, Felix M.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2010, 363 (06) : 542 - 551
  • [8] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [9] Epilepsy in 2015: the year of collaborations for big data
    Ben-Menachem, Elinor
    [J]. LANCET NEUROLOGY, 2016, 15 (01) : 6 - 7
  • [10] Automated Differentiation between Epileptic and Nonepileptic Convulsive Seizures
    Beniczky, Sandor
    Conradsen, Isa
    Moldovan, Mihai
    Jennum, Poul
    Fabricius, Martin
    Benedek, Krisztina
    Andersen, Noemi
    Hjalgrim, Helle
    Wolf, Peter
    [J]. ANNALS OF NEUROLOGY, 2015, 77 (02) : 348 - 351