A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities

被引:391
作者
Zhang, Jiachao [1 ]
Guo, Zhuang [2 ]
Xue, Zhengsheng [3 ]
Sun, Zhihong [1 ]
Zhang, Menghui [3 ]
Wang, Lifeng [1 ]
Wang, Guoyang [3 ]
Wang, Fang [1 ]
Xu, Jie [1 ]
Cao, Hongfang [1 ]
Xu, Haiyan [1 ]
Lv, Qiang [1 ]
Zhong, Zhi [1 ]
Chen, Yongfu [1 ]
Qimuge, Sudu [1 ]
Menghe, Bilige [1 ]
Zheng, Yi [1 ]
Zhao, Liping [3 ,4 ]
Chen, Wei [2 ]
Zhang, Heping [1 ]
机构
[1] Inner Mongolia Agr Univ, Dept Food Sci & Engn, Educ Minist PR China, Key Lab Dairy Biotechnol & Engn, Hohhot 010018, Inner Mongolia, Peoples R China
[2] Jiangnan Univ, Sch Food Sci & Technol, State Key Lab Food Sci & Technol, Wuxi 214122, Peoples R China
[3] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, State Key Lab Microbial Metab, Dept Biol Sci, Shanghai 200240, Peoples R China
[4] Shanghai Ctr Syst Biomed, Minist Educ, Key Lab Syst Biomed, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
SP-NOV; INFLAMMATORY RESPONSES; INTESTINAL MICROBIOTA; DIETARY FIBER; GEN; NOV; DIVERSITY; FERMENTATION; PROPOSAL; IMPACT; OBESE;
D O I
10.1038/ismej.2015.11
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Structural profiling of healthy human gut microbiota across heterogeneous populations is necessary for benchmarking and characterizing the potential ecosystem services provided by particular gut symbionts for maintaining the health of their hosts. Here we performed a large structural survey of fecal microbiota in 314 healthy young adults, covering 20 rural and urban cohorts from 7 ethnic groups living in 9 provinces throughout China. Canonical analysis of unweighted UniFrac principal coordinates clustered the subjects mainly by their ethnicities/geography and less so by lifestyles. Nine predominant genera, all of which are known to contain short-chain fatty acid producers, co-occurred in all individuals and collectively represented nearly half of the total sequences. Interestingly, species-level compositional profiles within these nine genera still discriminated the subjects according to their ethnicities/geography and lifestyles. Therefore, a phylogenetically diverse core of gut microbiota at the genus level may be commonly shared by distinctive healthy populations as functionally indispensable ecosystem service providers for the hosts.
引用
收藏
页码:1979 / 1990
页数:12
相关论文
共 63 条
[11]   Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa [J].
De Filippo, Carlotta ;
Cavalieri, Duccio ;
Di Paola, Monica ;
Ramazzotti, Matteo ;
Poullet, Jean Baptiste ;
Massart, Sebastien ;
Collini, Silvia ;
Pieraccini, Giuseppe ;
Lionetti, Paolo .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (33) :14691-14696
[12]   PHASCOLARCTOBACTERIUM FAECIUM GEN-NOV, SPEC NOV, A NOVEL TAXON OF THE SPOROMUSA GROUP OF BACTERIA [J].
DELDOT, T ;
OSAWA, R ;
STACKEBRANDT, E .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1993, 16 (03) :380-384
[13]   Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation [J].
Dethlefsen, Les ;
Relman, David A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 :4554-4561
[14]   High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol [J].
Dridi, Bedis ;
Henry, Mireille ;
El Khechine, Amel ;
Raoult, Didier ;
Drancourt, Michel .
PLOS ONE, 2009, 4 (09)
[15]  
Duncan SH, 2002, INT J SYST EVOL MICR, V52, P2141, DOI 10.1099/00207713-52-6-2141
[16]   Diversity of the human intestinal microbial flora [J].
Eckburg, PB ;
Bik, EM ;
Bernstein, CN ;
Purdom, E ;
Dethlefsen, L ;
Sargent, M ;
Gill, SR ;
Nelson, KE ;
Relman, DA .
SCIENCE, 2005, 308 (5728) :1635-1638
[17]   Microbial Co-occurrence Relationships in the Human Microbiome [J].
Faust, Karoline ;
Sathirapongsasuti, J. Fah ;
Izard, Jacques ;
Segata, Nicola ;
Gevers, Dirk ;
Raes, Jeroen ;
Huttenhower, Curtis .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (07)
[18]   An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice [J].
Fei, Na ;
Zhao, Liping .
ISME JOURNAL, 2013, 7 (04) :880-884
[19]   The role of the gut microbiota in nutrition and health [J].
Flint, Harry J. ;
Scott, Karen P. ;
Louis, Petra ;
Duncan, Sylvia H. .
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY, 2012, 9 (10) :577-589
[20]   Bifidobacteria can protect from enteropathogenic infection through production of acetate [J].
Fukuda, Shinji ;
Toh, Hidehiro ;
Hase, Koji ;
Oshima, Kenshiro ;
Nakanishi, Yumiko ;
Yoshimura, Kazutoshi ;
Tobe, Toru ;
Clarke, Julie M. ;
Topping, David L. ;
Suzuki, Tohru ;
Taylor, Todd D. ;
Itoh, Kikuji ;
Kikuchi, Jun ;
Morita, Hidetoshi ;
Hattori, Masahira ;
Ohno, Hiroshi .
NATURE, 2011, 469 (7331) :543-U791