Metabonomics technologies and their applications in physiological monitoring, drug safety assessment and disease diagnosis

被引:373
作者
Lindon, JC [1 ]
Holmes, E [1 ]
Bollard, ME [1 ]
Stanley, EG [1 ]
Nicholson, JK [1 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Fac Med, Div Biomed Sci, London SW7 2AZ, England
关键词
metabonomics; proteomics; genomics; transcriptomics; nuclear magnetic resonance; mass spectrometry; physiology; genetic modification; diagnosis; drug safety; atherosclerosis;
D O I
10.1080/13547500410001668379
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In this review, metabonomics, a combination of data-rich analytical chemical measurements and chemometrics for profiling metabolism in complex systems, is described and its applications are reviewed. Metabonomics is typically carried out using biofluids or tissue samples. The relevance of the technique is reviewed in relation to other '-omics', and it is shown how the methods can be applied to physiological evaluation, drug safety assessment, characterization of genetically modified animal models of disease, diagnosis of human disease, and drug therapy monitoring. The different types of analytical data, mainly from nuclear magnetic resonance spectroscopy and mass spectrometry, are summarized. The outputs from a metabonomics study allow sample classification, for example according to phenotype, drug safety or disease diagnosis, and interpretation of the reasons for classification yields information on combination biomarkers of effect. Transcriptomic and metabonomic data is currently being further integrated into a holistic understanding of systems biology. An assessment of the possible future role and impact of metabonomics is presented.
引用
收藏
页码:1 / 31
页数:31
相关论文
共 76 条
  • [41] 2-V
  • [42] AUTOMATIC DATA REDUCTION AND PATTERN-RECOGNITION METHODS FOR ANALYSIS OF H-1 NUCLEAR-MAGNETIC-RESONANCE SPECTRA OF HUMAN URINE FROM NORMAL AND PATHOLOGICAL STATES
    HOLMES, E
    FOXALL, PJD
    NICHOLSON, JK
    NEILD, GH
    BROWN, SM
    BEDDELL, CR
    SWEATMAN, BC
    RAHR, E
    LINDON, JC
    SPRAUL, M
    NEIDIG, P
    [J]. ANALYTICAL BIOCHEMISTRY, 1994, 220 (02) : 284 - 296
  • [43] Comparative biochemical effects of low doses of mercury II chloride in the F344 rat and the multimammate mouse (Mastomys natalensis)
    Holmes, E
    Bonner, FW
    Nicholson, JK
    [J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-PHARMACOLOGY TOXICOLOGY & ENDOCRINOLOGY, 1996, 114 (01): : 7 - 15
  • [44] Metabonomic characterization of genetic variations in toxicological and metabolic responses using probabilistic neural networks
    Holmes, E
    Nicholson, JK
    Tranter, G
    [J]. CHEMICAL RESEARCH IN TOXICOLOGY, 2001, 14 (02) : 182 - 191
  • [45] The identification of novel biomarkers of renal toxicity using automatic data reduction techniques and PCA of proton NMR spectra of urine
    Holmes, E
    Nicholson, JK
    Nicholls, AW
    Lindon, JC
    Connor, SC
    Polley, S
    Connelly, J
    [J]. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 1998, 44 (1-2) : 245 - 255
  • [46] AN INVESTIGATION OF TUMOR H-1 NUCLEAR-MAGNETIC-RESONANCE SPECTRA BY THE APPLICATION OF CHEMOMETRIC TECHNIQUES
    HOWELLS, SL
    MAXWELL, RJ
    PEET, AC
    GRIFFITHS, JR
    [J]. MAGNETIC RESONANCE IN MEDICINE, 1992, 28 (02) : 214 - 236
  • [47] Kahl G, 2001, DICT GENE TECHNOLOGY
  • [48] Analytical reproducibility in 1H NMR-based metabonomic urinalysis
    Keun, HC
    Ebbels, TMD
    Antti, H
    Bollard, ME
    Beckonert, O
    Schlotterbeck, G
    Senn, H
    Niederhauser, U
    Holmes, E
    Lindon, JC
    Nicholson, JK
    [J]. CHEMICAL RESEARCH IN TOXICOLOGY, 2002, 15 (11) : 1380 - 1386
  • [49] Cryogenic probe 13C NMR spectroscopy of urine for metabonomic studies
    Keun, HC
    Beckonert, O
    Griffin, JL
    Richter, C
    Moskau, D
    Lindon, JC
    Nicholson, JK
    [J]. ANALYTICAL CHEMISTRY, 2002, 74 (17) : 4588 - 4593
  • [50] Directly coupled HPLC-NMR and HPLC-NMR-MS in pharmaceutical research and development
    Lindon, JC
    Nicholson, JK
    Wilson, ID
    [J]. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 2000, 748 (01): : 233 - 258