Application of Advanced Non-Linear Spectral Decomposition and Regression Methods for Spectroscopic Analysis of Targeted and Non-Targeted Irradiation Effects in an In-Vitro Model

被引:3
作者
Slattery, Ciara [1 ]
Nguyen, Khanh [1 ,2 ]
Shields, Laura [3 ]
Vega-Carrascal, Isabel [1 ,2 ]
Singleton, Sean [1 ,2 ]
Lyng, Fiona M. [1 ,2 ]
McClean, Brendan [3 ]
Meade, Aidan D. [1 ,2 ]
机构
[1] Technol Univ Dublin, Sch Phys & Clin & Optometr Sci, City Campus, Dublin 8, Ireland
[2] Technol Univ Dublin, Radiat & Environm Sci Ctr, Focas Res Inst, Dublin 8, Ireland
[3] St Lukes Hosp, Med Phys Dept, Highfield Rd, Dublin 6, Ireland
基金
爱尔兰科学基金会;
关键词
Fourier transform infrared microspectroscopy (FTIRM); out of field effects; t-stochastic neighbourhood embedding (t-SNE); principal components analysis (PCA); support vector machine (SVM); extreme gradient boosting regression (XGBR); VIBRATIONAL SPECTROSCOPY; RADIATION-THERAPY; HUMAN FIBROBLASTS; TUMOR-CELLS; BYSTANDER; CANCER; DIAGNOSIS; RESPONSES; FTIR; SIGNATURES;
D O I
10.3390/ijms232112986
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Irradiation of the tumour site during treatment for cancer with external-beam ionising radiation results in a complex and dynamic series of effects in both the tumour itself and the normal tissue which surrounds it. The development of a spectral model of the effect of each exposure and interaction mode between these tissues would enable label free assessment of the effect of radiotherapeutic treatment in practice. In this study Fourier transform Infrared microspectroscopic imaging was employed to analyse an in-vitro model of radiotherapeutic treatment for prostate cancer, in which a normal cell line (PNT1A) was exposed to low-dose X-ray radiation from the scattered treatment beam, and also to irradiated cell culture medium (ICCM) from a cancer cell line exposed to a treatment relevant dose (2 Gy). Various exposure modes were studied and reference was made to previously acquired data on cellular survival and DNA double strand break damage. Spectral analysis with manifold methods, linear spectral fitting, non-linear classification and non-linear regression approaches were found to accurately segregate spectra on irradiation type and provide a comprehensive set of spectral markers which differentiate on irradiation mode and cell fate. The study demonstrates that high dose irradiation, low-dose scatter irradiation and radiation-induced bystander exposure (RIBE) signalling each produce differential effects on the cell which are observable through spectroscopic analysis.
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页数:20
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