Application of Advanced Non-Linear Spectral Decomposition and Regression Methods for Spectroscopic Analysis of Targeted and Non-Targeted Irradiation Effects in an In-Vitro Model

被引:3
作者
Slattery, Ciara [1 ]
Nguyen, Khanh [1 ,2 ]
Shields, Laura [3 ]
Vega-Carrascal, Isabel [1 ,2 ]
Singleton, Sean [1 ,2 ]
Lyng, Fiona M. [1 ,2 ]
McClean, Brendan [3 ]
Meade, Aidan D. [1 ,2 ]
机构
[1] Technol Univ Dublin, Sch Phys & Clin & Optometr Sci, City Campus, Dublin 8, Ireland
[2] Technol Univ Dublin, Radiat & Environm Sci Ctr, Focas Res Inst, Dublin 8, Ireland
[3] St Lukes Hosp, Med Phys Dept, Highfield Rd, Dublin 6, Ireland
基金
爱尔兰科学基金会;
关键词
Fourier transform infrared microspectroscopy (FTIRM); out of field effects; t-stochastic neighbourhood embedding (t-SNE); principal components analysis (PCA); support vector machine (SVM); extreme gradient boosting regression (XGBR); VIBRATIONAL SPECTROSCOPY; RADIATION-THERAPY; HUMAN FIBROBLASTS; TUMOR-CELLS; BYSTANDER; CANCER; DIAGNOSIS; RESPONSES; FTIR; SIGNATURES;
D O I
10.3390/ijms232112986
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Irradiation of the tumour site during treatment for cancer with external-beam ionising radiation results in a complex and dynamic series of effects in both the tumour itself and the normal tissue which surrounds it. The development of a spectral model of the effect of each exposure and interaction mode between these tissues would enable label free assessment of the effect of radiotherapeutic treatment in practice. In this study Fourier transform Infrared microspectroscopic imaging was employed to analyse an in-vitro model of radiotherapeutic treatment for prostate cancer, in which a normal cell line (PNT1A) was exposed to low-dose X-ray radiation from the scattered treatment beam, and also to irradiated cell culture medium (ICCM) from a cancer cell line exposed to a treatment relevant dose (2 Gy). Various exposure modes were studied and reference was made to previously acquired data on cellular survival and DNA double strand break damage. Spectral analysis with manifold methods, linear spectral fitting, non-linear classification and non-linear regression approaches were found to accurately segregate spectra on irradiation type and provide a comprehensive set of spectral markers which differentiate on irradiation mode and cell fate. The study demonstrates that high dose irradiation, low-dose scatter irradiation and radiation-induced bystander exposure (RIBE) signalling each produce differential effects on the cell which are observable through spectroscopic analysis.
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页数:20
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共 63 条
  • [1] Integration of new biological and physical retrospective dosimetry methods into EU emergency response plans - joint RENEB and EURADOS inter-laboratory comparisons
    Ainsbury, Elizabeth
    Badie, Christophe
    Barnard, Stephen
    Manning, Grainne
    Moquet, Jayne
    Abend, Michael
    Antunes, Ana Catarina
    Barrios, Lleonard
    Bassinet, Celine
    Beinke, Christina
    Bortolin, Emanuela
    Bossin, Lily
    Bricknell, Clare
    Brzoska, Kamil
    Buraczewska, Iwona
    Huertas Castano, Carlos
    Cemusova, Zina
    Christiansson, Maria
    Mateos Cordero, Santiago
    Coster, Guillaume
    Della Monac, Sara
    Desangles, Francois
    Discher, Michael
    Dominguez, Inmaculada
    Doucha-Senf, Sven
    Eakins, Jon
    Fattibene, Paola
    Filippi, Silvia
    Frenzel, Monika
    Georgieva, Dimka
    Gregoire, Eric
    Guogyte, Kamile
    Hadjidekova, Valeria
    Hadjiiska, Ljubomira
    Hristova, Rositsa
    Karakosta, Maria
    Kis, Eniko
    Kriehuber, Ralf
    Lee, Jungil
    Lloyd, David
    Lumniczky, Katalin
    Lyng, Fiona
    Macaeva, Ellina
    Majewski, Matthaeus
    Vanda Martins, S.
    McKeever, Stephen W. S.
    Meade, Aidan
    Medipally, Dinesh
    Meschini, Roberta
    M'kacher, Radhia
    [J]. INTERNATIONAL JOURNAL OF RADIATION BIOLOGY, 2017, 93 (01) : 99 - 109
  • [2] RMieS-EMSC correction for infrared spectra of biological cells: Extension using full Mie theory and GPU computing
    Bassan, Paul
    Kohler, Achim
    Martens, Harald
    Lee, Joe
    Jackson, Edward
    Lockyer, Nicholas
    Dumas, Paul
    Brown, Michael
    Clarke, Noel
    Gardner, Peter
    [J]. JOURNAL OF BIOPHOTONICS, 2010, 3 (8-9) : 609 - 620
  • [3] Development of high-throughput ATR-FTIR technology for rapid triage of brain cancer
    Butler, Holly J.
    Brennan, Paul M.
    Cameron, James M.
    Finlayson, Duncan
    Hegarty, Mark G.
    Jenkinson, Michael D.
    Palmer, David S.
    Smith, Benjamin R.
    Bakerl, Matthew J.
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [4] Modelling responses to spatially fractionated radiation fields using preclinical image-guided radiotherapy
    Butterworth, Karl Terence
    Ghita, Mihaela
    McMahon, Stephen J.
    Mcgarry, Conor K.
    Griffin, Robert J.
    Hounsell, Alan R.
    Prise, Kevin M.
    [J]. BRITISH JOURNAL OF RADIOLOGY, 2017, 90 (1069)
  • [5] Multiplexed live-cell profiling with Raman probes
    Chen, Chen
    Zhao, Zhilun
    Qian, Naixin
    Wei, Shixuan
    Hu, Fanghao
    Min, Wei
    [J]. NATURE COMMUNICATIONS, 2021, 12 (01)
  • [6] XGBoost: A Scalable Tree Boosting System
    Chen, Tianqi
    Guestrin, Carlos
    [J]. KDD'16: PROCEEDINGS OF THE 22ND ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING, 2016, : 785 - 794
  • [7] Cristianini N., 2000, An introduction to support vector machines and other kernel-based learning methods
  • [8] Cruz JA, 2006, CANCER INFORM, V2, P59
  • [9] Cullen D., 2020, Transl. Biophotonics, V2
  • [10] Radiation-induced bystander and abscopal effects: important lessons from preclinical models
    Daguenet, Elisabeth
    Louati, Safa
    Wozny, Anne-Sophie
    Vial, Nicolas
    Gras, Mathilde
    Guy, Jean-Baptiste
    Vallard, Alexis
    Rodriguez-Lafrasse, Claire
    Magne, Nicolas
    [J]. BRITISH JOURNAL OF CANCER, 2020, 123 (03) : 339 - 348