Maximum number of fixed points in regulatory Boolean networks

被引:83
作者
Aracena, Julio [1 ]
机构
[1] Univ Concepcion, Dept Ingn Matemat, Concepcion, Chile
关键词
genetic network; attractor; sign-definite function; signed digraph; positive cycle; feedback vertex set;
D O I
10.1007/s11538-008-9304-7
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Boolean networks (BNs) have been extensively used as mathematical models of genetic regulatory networks. The number of fixed points of a BN is a key feature of its dynamical behavior. Here, we study the maximum number of fixed points in a particular class of BNs called regulatory Boolean networks, where each interaction between the elements of the network is either an activation or an inhibition. We find relationships between the positive and negative cycles of the interaction graph and the number of fixed points of the network. As our main result, we exhibit an upper bound for the number of fixed points in terms of minimum cardinality of a set of vertices meeting all positive cycles of the network, which can be applied in the design of genetic regulatory networks.
引用
收藏
页码:1398 / 1409
页数:12
相关论文
共 28 条
  • [1] Akutsu, 1998, Genome Inform Ser Workshop Genome Inform, V9, P151
  • [2] ANTHONY M, 1987, MONOGRAPHS DISCRETE
  • [3] Regulatory network for cell shape changes during Drosophila ventral furrow formation
    Aracena, J
    González, M
    Zuñiga, A
    Mendez, MA
    Cambiazo, V
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2006, 239 (01) : 49 - 62
  • [4] ARACENA J, 2001, THESIS U CHILE SANTI
  • [5] Counting and classifying attractors in high dimensional dynamical systems
    Bagley, RJ
    Glass, L
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1996, 183 (03) : 269 - 284
  • [6] STRUCTURAL BALANCE - A GENERALIZATION OF HEIDER THEORY
    CARTWRIGHT, D
    HARARY, F
    [J]. PSYCHOLOGICAL REVIEW, 1956, 63 (05) : 277 - 293
  • [7] Positive and negative feedback: Striking a balance between necessary antagonists
    Cinquin, O
    Demongeot, J
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2002, 216 (02) : 229 - 241
  • [8] Positive feedback circuits and memory
    Demongeot, L
    Kaufman, M
    Thomas, R
    [J]. COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE III-SCIENCES DE LA VIE-LIFE SCIENCES, 2000, 323 (01): : 69 - 79
  • [9] LOGICAL ANALYSIS OF CONTINUOUS, NONLINEAR BIOCHEMICAL CONTROL NETWORKS
    GLASS, L
    KAUFFMAN, SA
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1973, 39 (01) : 103 - 129
  • [10] Harary F., 1965, Structural Models: An Introduction to the Theory of Directed Graphs