Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

被引:26
作者
Brick, Kevin [1 ]
Watanabe, Junichi [2 ]
Pizzi, Elisabetta [1 ]
机构
[1] Ist Super Sanita, Dipartimento Malattie Infett Parassitarie & Immun, I-00161 Rome, Italy
[2] Univ Tokyo, Inst Med Sci, Dept Parasitol, Minato Ku, Tokyo 1088639, Japan
关键词
D O I
10.1186/gb-2008-9-12-r178
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition.
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收藏
页数:16
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