Geographic distribution of Waxy gene SNPs and indels in foxtail millet, Setaria italica (L.) P. Beauv.

被引：7

作者：

Hachiken, Takehiro ^{[1
,2
]}

Sato, Kei ^{[1
,3
]}

Hasegawa, Takahiro ^{[1
]}

Ichitani, Katsuyuki ^{[4
]}

Kawase, Makoto ^{[5
]}

Fukunaga, Kenji ^{[1
]}

机构：

[1] Prefectural Univ Hiroshima, Fac Life & Environm Sci, Shobara, Hiroshima 7270023, Japan

[2] Kobe Univ, Grad Sch Agr Sci, Nada Ku, Kobe, Hyogo 6578501, Japan

[3] Hokkaido Univ, Grad Sch Agr, Kita Ku, Sapporo, Hokkaido 0608589, Japan

[4] Kagoshima Univ, Fac Agr, Kagoshima 8908580, Japan

[5] Natl Inst Agrobiol Sci, Genet Resources Ctr, Tsukuba, Ibaraki 3058602, Japan

来源：

GENETIC RESOURCES AND CROP EVOLUTION | 2013年 / 60卷 / 04期

关键词：

Genetic diversity; Granule-bound starch synthase 1; Phylogeny; Polymorphism; Sequence; Setaria italica ssp italica; MOLECULAR-BASIS; COMMON MILLET; DIFFERENTIATION; PANICUM; ORIGIN; LANDRACES; EVOLUTION; ENDOSPERM; ALLELE; LOCUS;

D O I：

10.1007/s10722-012-9942-3

中图分类号：

S3 [农学（农艺学）];

学科分类号：

0901 ;

摘要：

To elucidate diversity and evolution of the Waxy gene in foxtail millet, Setaria italica, we analyzed sequence polymorphism of Waxy gene in 83 foxtail millet landraces collected from various regions covering the entire geographical distribution of this millet in Europe and Asia. We found a unique geographic distribution pattern at the sequence level of gene haplotypes and also found a large diversity in East Asian landraces. We also found a higher degree of genetic polymorphism in a non-waxy phenotype than in other low amylose types, supporting the hypothesis that low amylose types recently originated from non-waxy type.

引用

页码：1559 / 1570

页数：12

共 50 条

[1] Geographic distribution of Waxy gene SNPs and indels in foxtail millet, Setaria italica (L.) P. Beauv.
Takehiro Hachiken
Kei Sato
Takahiro Hasegawa
Katsuyuki Ichitani
Makoto Kawase
Kenji Fukunaga
Genetic Resources and Crop Evolution, 2013, 60 : 1559 - 1570
[2] Allelic variation of the Waxy gene in foxtail millet [Setaria italica (L.) P. Beauv.] by single nucleotide polymorphisms
K. Van
S. Onoda
M. Y. Kim
K. D. Kim
S.-H. Lee
Molecular Genetics and Genomics, 2008, 279 : 255 - 266
[3] Allelic variation of the Waxy gene in foxtail millet [Setaria italica (L.) P. Beauv.] by single nucleotide polymorphisms
Van, K.
Onoda, S.
Kim, M. Y.
Kim, K. D.
Lee, S. -H.
MOLECULAR GENETICS AND GENOMICS, 2008, 279 (03) : 255 - 266
[4] Foxtail millet (Setaria italica (L.) P. Beauv.) in Mazandaran/Northern Iran
Hammer, Karl
Khoshbakht, Korous
GENETIC RESOURCES AND CROP EVOLUTION, 2007, 54 (04) : 907 - 911
[5] Mitochondrial DNA variation in foxtail millet, Setaria italica (L.) P.!Beauv.
Fukunaga, K
Kato, K
EUPHYTICA, 2003, 129 (01) : 7 - 13
[6] Foxtail millet (Setaria italica (L.) P. Beauv.) in Mazandaran/Northern Iran
Karl Hammer
Korous Khoshbakht
Genetic Resources and Crop Evolution, 2007, 54 : 907 - 911
[7] Genetic variation of blast resistance in foxtail millet (Setaria italica (L.) P. Beauv.) and its geographic distribution
Nakayama, H
Nagamine, T
Hayashi, N
GENETIC RESOURCES AND CROP EVOLUTION, 2005, 52 (07) : 863 - 868
[8] Genetic Variation of Blast Resistance in Foxtail Millet (Setaria italica (L.) P. Beauv.) and its Geographic Distribution
Hiroki Nakayama
Tsukasa Nagamine
Nagao Hayashi
Genetic Resources and Crop Evolution, 2005, 52 : 863 - 868
[9] Mitochondrial DNA variation in foxtail millet, Setaria italica (L.) P. Beauv.
Kenji Fukunaga
Kenji Kato
Euphytica, 2003, 129 : 7 - 13
[10] Structural variation in the Waxy gene and differentiation in foxtail millet [Setaria italica (L.) P. Beauv.]:: implications for multiple origins of the waxy phenotype
Fukunaga, K
Kawase, M
Kato, K
MOLECULAR GENETICS AND GENOMICS, 2002, 268 (02) : 214 - 222

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