Whole-genome and whole-exome sequencing in neurological diseases

被引:86
|
作者
Foo, Jia-Nee [2 ]
Liu, Jian-Jun [2 ]
Tan, Eng-King [1 ]
机构
[1] Duke Natl Univ Singapore, Grad Sch Med, Singapore Gen Hosp, Dept Neurol,Natl Neurosci Inst, Block 1,Level 3,Outram Rd, Singapore 169108, Singapore
[2] ASTAR, Genome Inst Singapore, Singapore 138672, Singapore
关键词
DE-NOVO MUTATIONS; PARKINSONS-DISEASE; WIDE ASSOCIATION; COMMON VARIANTS; GENE; COMPLEX; RISK; RARE; STRATEGIES; CAPTURE;
D O I
10.1038/nrneurol.2012.148
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Genetic risk factors that underlie many rare and common neurological disorders remain poorly understood because of the multifactorial and heterogeneous nature of these complex traits. With the decreasing cost of massively parallel sequencing technologies, whole-genome and whole-exome sequencing will soon allow the characterization of the full spectrum of sequence and structural variants present in each individual. Methods are being developed to parse the huge amount of genomic data and to sift out which variants are associated with diseases. Numerous challenges are inherent in the identification of rare and common variants that have a role in complex neurological diseases, and tools are being developed to overcome these challenges. Given that genomic data will soon be the main driver towards the goal of personalized medicine, future developments in the production and interpretation of data, as well as in ethics and counselling, will be needed for whole-genome and whole-exome sequencing to be used as informative tools in a clinical setting.
引用
收藏
页码:508 / 517
页数:10
相关论文
共 50 条
  • [1] Whole-genome and whole-exome sequencing in neurological diseases
    Jia-Nee Foo
    Jian-Jun Liu
    Eng-King Tan
    Nature Reviews Neurology, 2012, 8 : 508 - 517
  • [2] Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants
    Belkadi, Aziz
    Bolze, Alexandre
    Itan, Yuval
    Cobat, Aurelie
    Vincent, Quentin B.
    Antipenko, Alexander
    Shang, Lei
    Boisson, Bertrand
    Casanova, Jean-Laurent
    Abel, Laurent
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (17) : 5473 - 5478
  • [3] Advantages and Perils of Clinical Whole-Exome and Whole-Genome Sequencing in Cardiomyopathy
    Francesco Mazzarotto
    Iacopo Olivotto
    Roddy Walsh
    Cardiovascular Drugs and Therapy, 2020, 34 : 241 - 253
  • [4] Advantages and Perils of Clinical Whole-Exome and Whole-Genome Sequencing in Cardiomyopathy
    Mazzarotto, Francesco
    Olivotto, Iacopo
    Walsh, Roddy
    CARDIOVASCULAR DRUGS AND THERAPY, 2020, 34 (02) : 241 - 253
  • [5] Readability of informed consent forms for whole-exome and whole-genome sequencing
    Niemiec E.
    Vears D.F.
    Borry P.
    Howard H.C.
    Journal of Community Genetics, 2018, 9 (2) : 143 - 151
  • [6] Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
    Oesper, Layla
    Satas, Gryte
    Raphael, Benjamin J.
    BIOINFORMATICS, 2014, 30 (24) : 3532 - 3540
  • [7] Applying whole-genome and whole-exome sequencing in breast cancer: a review of the landscape
    Ganatra, Hetvi
    Tan, Joecelyn Kirani
    Simmons, Ana
    Bigogno, Carola Maria
    Khurana, Vatsala
    Ghose, Aruni
    Ghosh, Adheesh
    Mahajan, Ishika
    Boussios, Stergios
    Maniam, Akash
    Ayodele, Olubukola
    BREAST CANCER, 2024, 31 (06) : 999 - 1009
  • [8] Achieving reproducibility and accuracy in cancer mutation detection with whole-genome and whole-exome sequencing
    Xiao, Wenming
    CANCER RESEARCH, 2019, 79 (13)
  • [9] Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma
    Xiaoyu Wang
    Xiaohong Li
    Yichen Cheng
    Xin Sun
    Xibin Sun
    Steve Self
    Charles Kooperberg
    James Y. Dai
    Human Genomics, 9
  • [10] Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma
    Wang, Xiaoyu
    Li, Xiaohong
    Cheng, Yichen
    Sun, Xin
    Sun, Xibin
    Self, Steve
    Kooperberg, Charles
    Dai, James Y.
    HUMAN GENOMICS, 2015, 9