Phase Separation in a Lipid/Cholesterol System: Comparison of Coarse-Grained and United-Atom Simulations

被引:49
作者
Hakobyan, Davit [1 ]
Heuer, Andreas [1 ]
机构
[1] Univ Munster, Inst Phys Chem, D-48149 Munster, Germany
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PARTICLE MESH EWALD; LIPID RAFTS; DOMAIN FORMATION; PHOSPHOLIPID-MEMBRANES; TERNARY MIXTURES; MODEL; CHOLESTEROL; BILAYERS; DIFFUSION;
D O I
10.1021/jp312245y
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Ternary mixtures of saturated and unsaturated phospholipids and cholesterol constitute a well-known model system to study raft formation in membranes. This phenomenon is, e.g., observed in cell membranes. Here, coarse-grained (CG) and microscopic united-atom (UA) simulations are performed to investigate the phase separation of a membrane bilayer for the ternary system of saturated 16:0 (DPPC) and unsaturated 18:2 (DUPC) phospholipids and cholesterol (CHOL). The results of a 9 mu s UA simulation demonstrate the onset of phase separation and can be compared with properties of the corresponding CG system. While sharing the structural features of phase separation in the CG model, the onset of demixing for the UA model is 40 times slower. This factor can be rationalized by the different short-time diffusion constants. Various system properties such as order parameters and lipid CHOL and CHOL CHOL interactions are analyzed and compared between the UA and CG models. From the structural perspective, the phase separation process appears to be rather similar for both models, which illustrates once more the power of using CG approaches.
引用
收藏
页码:3841 / 3851
页数:11
相关论文
共 43 条
[1]   Concerted diffusion of lipids in raft-like membranes [J].
Apajalahti, Touko ;
Niemela, Perttu ;
Govindan, Praveen Nedumpully ;
Miettinen, Markus S. ;
Salonen, Emppu ;
Marrink, Siewert-Jan ;
Vattulainen, Ilpo .
FARADAY DISCUSSIONS, 2010, 144 :411-430
[2]   Molecular dynamics simulation of a polyunsaturated lipid bilayer susceptible to lipid peroxidation [J].
Bachar, M ;
Brunelle, P ;
Tieleman, DP ;
Rauk, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (22) :7170-7179
[3]   A correlation between lipid domain shape and binary phospholipid mixture composition in free standing bilayers: A two-photon fluorescence microscopy study [J].
Bagatolli, LA ;
Gratton, E .
BIOPHYSICAL JOURNAL, 2000, 79 (01) :434-447
[4]  
Berendsen HJ, 1981, Interaction models for water in relation to protein hydration, DOI DOI 10.1007/978-94-015-7658-1_21
[5]   Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature [J].
Berger, O ;
Edholm, O ;
Jahnig, F .
BIOPHYSICAL JOURNAL, 1997, 72 (05) :2002-2013
[6]   FREE ENERGY OF A NONUNIFORM SYSTEM .1. INTERFACIAL FREE ENERGY [J].
CAHN, JW ;
HILLIARD, JE .
JOURNAL OF CHEMICAL PHYSICS, 1958, 28 (02) :258-267
[7]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[8]   Atomistic Simulation of Cholesterol Effects on Miscibility of Saturated and Unsaturated Phospholipids: Implications for Liquid-Ordered/Liquid-Disordered Phase Coexistence [J].
de Joannis, Jason ;
Coppock, Patrick S. ;
Yin, Fuchang ;
Mori, Makoto ;
Zamorano, Absalom ;
Kindt, James T. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (10) :3625-3634
[9]   Partitioning of Thy-1, GM1, and cross-linked phospholipid analogs into lipid rafts reconstituted in supported model membrane monolayers [J].
Dietrich, C ;
Volovyk, ZN ;
Levi, M ;
Thompson, NL ;
Jacobson, K .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (19) :10642-10647
[10]   Lipid rafts reconstituted in model membranes [J].
Dietrich, C ;
Bagatolli, LA ;
Volovyk, ZN ;
Thompson, NL ;
Levi, M ;
Jacobson, K ;
Gratton, E .
BIOPHYSICAL JOURNAL, 2001, 80 (03) :1417-1428