Genome-wide identification of bZIP transcription factors and their responses to abiotic stress in celery

被引:9
|
作者
Yang, Qing-Qing
Feng, Kai
Xu, Zhi-Sheng
Duan, Ao-Qi
Liu, Jie-Xia
Xiong, Ai-Sheng
机构
[1] Nanjing Agr Univ, State Key Lab Crop Genet & Germplasm Enhancement, Minist Agr, Coll Hort, Nanjing, Jiangsu, Peoples R China
[2] Nanjing Agr Univ, Rural Affairs Key Lab Biol & Germplasm Enhancemen, Coll Hort, Nanjing, Jiangsu, Peoples R China
基金
中国国家自然科学基金;
关键词
abiotic stress; bZIP; celery; expression profiles; evolution; transcription factors; LEUCINE ZIPPER; GENE FAMILY; DNA; ROLES; EXPRESSION; PROLINE; DOMAIN;
D O I
10.1080/13102818.2019.1611386
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Celery (Apium graveolens L.) is one of the most important vegetables in the Apiaceae family, rich in nutrients and widely grown around the world. bZIP transcription factors family plays an important role in the transcription regulation of plant growth and development, as well as adaptation to the external environment. In this paper, 62 bZIP family transcription factors were screened and identified based on the whole genome sequence of celery. The bZIP proteins of celery and Arabidopsis thaliana were divided into 10 subfamilies according to the phylogenetic tree. Phylogenetic and evolutionary analysis showed that the number of bZIP family members gradually expanded from lower plants to higher plants during the long evolution process. Based on the homology of celery and A. thaliana bZIP genes, the interaction network between celery bZIP transcription factors and other proteins in the genome was constructed, and the correlation data of protein interaction were also obtained. The expression profiles of 12 selected AgbZIP genes were detected and analyzed under abiotic stress treatments and different tissues using RT-qPCR. The results showed that AgbZIP can respond to high temperature, low temperature, drought, and high salt stress.
引用
收藏
页码:707 / 718
页数:12
相关论文
共 50 条
  • [41] The bZIP Transcription Factor Family in Adzuki Bean (Vigna Angularis): Genome-Wide Identification, Evolution, and Expression Under Abiotic Stress During the Bud Stage
    Yin, Zhengong
    Meng, Xianxin
    Guo, Yifan
    Wei, Shuhong
    Lai, Yongcai
    Wang, Qiang
    FRONTIERS IN GENETICS, 2022, 13
  • [42] Genome-wide identification of soybean WRKY transcription factors in response to salt stress
    Yu, Yanchong
    Wang, Nan
    Hu, Ruibo
    Xiang, Fengning
    SPRINGERPLUS, 2016, 5
  • [43] Genome-wide identification and analysis of GRAS transcription factors in the bottle gourd genome
    Sidhu, Navjot Singh
    Pruthi, Gomsie
    Singh, Sahildeep
    Bishnoi, Ritika
    Singla, Deepak
    SCIENTIFIC REPORTS, 2020, 10 (01):
  • [44] Genome-wide identification and expression analysis of the bZIP transcription factor family genes in response to abiotic stress in Nicotiana tabacum L.
    Duan, Lili
    Mo, Zejun
    Fan, Yue
    Li, Kuiyin
    Yang, Mingfang
    Li, Dongcheng
    Ke, Yuzhou
    Zhang, Qian
    Wang, Feiyan
    Fan, Yu
    Liu, Renxiang
    BMC GENOMICS, 2022, 23 (01)
  • [45] Genome-wide identification and abiotic stress responses of DGK gene family in maize
    Yingnan Gu
    Changjiang Zhao
    Lin He
    Bowei Yan
    Jiejing Dong
    Zuotong Li
    Kejun Yang
    Jingyu Xu
    Journal of Plant Biochemistry and Biotechnology, 2018, 27 : 156 - 166
  • [46] Genome-wide identification of oat TCP gene family and expression patterns under abiotic stress
    Nie, Jiaming
    Zhao, Hongbin
    Guo, Xiaodong
    Zhang, Tao
    Han, Bing
    Liu, Huiyan
    FRONTIERS IN GENETICS, 2025, 16
  • [47] Genome-wide identification and expression analysis of the bZIP transcription factor family genes in response to abiotic stress in Nicotiana tabacum L.
    Lili Duan
    Zejun Mo
    Yue Fan
    Kuiyin Li
    Mingfang Yang
    Dongcheng Li
    Yuzhou Ke
    Qian Zhang
    Feiyan Wang
    Yu Fan
    Renxiang Liu
    BMC Genomics, 23
  • [48] Genome-wide analysis of the abiotic stress-related bZIP family in switchgrass
    Weiwei Wang
    Yongfeng Wang
    Shumeng Zhang
    Kunliang Xie
    Chao Zhang
    Yajun Xi
    Fengli Sun
    Molecular Biology Reports, 2020, 47 : 4439 - 4454
  • [49] bZIP Transcription Factors: Structure, Modification, Abiotic Stress Responses and Application in Plant Improvement
    Guo, Zhonglong
    Dzinyela, Raphael
    Yang, Liming
    Hwarari, Delight
    PLANTS-BASEL, 2024, 13 (15):
  • [50] Genome-wide identification and functional characterization of WRKY transcription factors involved in the response to salt and heat stress in garlic (Allium sativum L)
    Yang, Qing-Qing
    Yang, Feng
    Zhao, Yong-Qiang
    Lu, Xin-Juan
    Liu, Can-Yu
    Zhang, Bi-Wei
    Ge, Jie
    Fan, Ji-De
    BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2021, 35 (01) : 1966 - 1976