Development of oligonucleotide probes for FISH karyotyping in Haynaldia villosa, a wild relative of common wheat

被引:13
作者
Lei, Jia [1 ]
Zhou, Jiawen [1 ]
Sun, Haojie [1 ]
Wan, Wentao [1 ]
Xiao, Jin [1 ]
Yuan, Chunxia [1 ]
Karafiatova, Miroslava [2 ]
Dolezel, Jaroslav [2 ]
Wang, Haiyan [1 ]
Wang, Xiue [1 ]
机构
[1] Nanjing Agr Univ, Cytogenet Inst, State Key Lab Crop Genet & Germplasm Enhancement, JCIC MCP, Nanjing 210095, Jiangsu, Peoples R China
[2] Czech Acad Sci, Ctr Reg Hana Biotechnol & Agr Res, Inst Expt Bot, Slechtitelu 31, Olomouc 77900, Czech Republic
来源
CROP JOURNAL | 2020年 / 8卷 / 04期
基金
中国国家自然科学基金;
关键词
Chromosome identification; Haynaldia villosa; Oligonucleotide probes; Tandem DNA repeats; DASYPYRUM-VILLOSUM; RESISTANCE GENE; CHROMOSOMES; CHROMATIN; QUALITY; L;
D O I
10.1016/j.cj.2020.02.008
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Haynaldia villosa is a wild relative of wheat and a valuable gene resource for wheat improvement. Owing to the limited number of probes available for fluorescence in situ hybridization (FISH), the resolution at which the karyotype of H. villosa can be characterized is poor, hampering accurate characterization of small segmental alien introgressions. We designed ten oligonucleotide probes using tandem repeats in DNA sequences derived from the short arm of H. villosa chromosome 6V (6VS). FISH with seven of them resulted in clear signals on H. villosa chromosomes. Using these, we constructed FISH karyotypes for H. villosa using oligo-6VS-1 and oligo-6VS-35 oligonucleotides and characterized the distribution of the two probes in five different H. villosa accessions. The new FISH probes can efficiently characterize H. villosa introgressions into wheat. (C) 2020 Crop Science Society of China and Institute of Crop Science, CAAS. Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co., Ltd.
引用
收藏
页码:676 / 681
页数:6
相关论文
共 25 条
[1]   A novel, simple and rapid nondenaturing FISH (ND-FISH) technique for the detection of plant telomeres. Potential used and possible target structures detected [J].
Cuadrado, Angeles ;
Golczyk, Hieronim ;
Jouve, Nicolas .
CHROMOSOME RESEARCH, 2009, 17 (06) :755-762
[2]   Flow Sorting and Molecular Cytogenetic Identification of Individual Chromosomes of Dasypyrum villosum L. (H. villosa) by a Single DNA Probe [J].
Grosso, Valentina ;
Farina, Anna ;
Gennaro, Andrea ;
Giorgi, Debora ;
Lucretti, Sergio .
PLOS ONE, 2012, 7 (11)
[3]   Physical location of tandem repeats in the wheat genome and application for chromosome identification [J].
Lang, Tao ;
Li, Guangrong ;
Wang, Hongjin ;
Yu, Zhihui ;
Chen, Qiheng ;
Yang, Ennian ;
Fu, Shulan ;
Tang, Zongxiang ;
Yang, Zujun .
PLANTA, 2019, 249 (03) :663-675
[4]   Molecular cytogenetic (FISH) and genome analysis of diploid wheatgrasses and their phylogenetic relationship [J].
Linc, Gabriella ;
Gaal, Eszter ;
Molnar, Istvan ;
Icso, Diana ;
Badaeva, Ekaterina ;
Molnar-Lang, Marta .
PLOS ONE, 2017, 12 (03)
[5]   TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads [J].
Novak, Petr ;
Robledillo, Laura Avila ;
Koblizkova, Andrea ;
Vrbova, Iva ;
Neumann, Pavel ;
Macas, Jiri .
NUCLEIC ACIDS RESEARCH, 2017, 45 (12)
[6]   A novel Robertsonian translocation event leads to transfer of a stem rust resistance gene (Sr52) effective against race Ug99 from Dasypyrum villosum into bread wheat [J].
Qi, L. L. ;
Pumphrey, M. O. ;
Friebe, Bernd ;
Zhang, P. ;
Qian, C. ;
Bowden, R. L. ;
Rouse, M. N. ;
Jin, Y. ;
Gill, B. S. .
THEORETICAL AND APPLIED GENETICS, 2011, 123 (01) :159-167
[7]  
Rychlik Wojciech, 2007, V402, P35
[8]   The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes [J].
Said, Mahmoud ;
Hribova, Eva ;
Danilova, Tatiana V. ;
Karafiatova, Miroslava ;
Cizkova, Jana ;
Friebe, Bernd ;
Dolezel, Jaroslav ;
Gill, Bikram S. ;
Vrana, Jan .
THEORETICAL AND APPLIED GENETICS, 2018, 131 (10) :2213-2227
[9]   Polymorphism analysis using 1RS-specific molecular markers in rye cultivars (Secale cereale l.) of various origin [J].
Schneider, A. ;
Molnar-Lang, M. .
CEREAL RESEARCH COMMUNICATIONS, 2008, 36 (01) :11-19
[10]   Construction and application of oligo-based FISH karyotype of Haynaldia villosa [J].
Sun, Haojie ;
Song, Jingjing ;
Lei, Jia ;
Song, Xinying ;
Dai, Keli ;
Xiao, Jin ;
Yuan, Chunxia ;
An, Shengmin ;
Wang, Haiyan ;
Wang, Xiue .
JOURNAL OF GENETICS AND GENOMICS, 2018, 45 (08) :463-466