The complete mitochondrial genome of the Copadichromis trimaculatus

被引:0
作者
Wen, Xiangru [1 ]
Wang, Cailin [1 ]
Li, Man [1 ]
Wang, Haiyan [1 ]
Zhang, Rongli [1 ]
机构
[1] Xuzhou Med Univ, Sch Basic Educ Sci, Xuzhou 221004, Jiangsu, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2017年 / 2卷 / 01期
关键词
Mitochondrial genome; Copadichromis trimaculatus; phylogenic relationship;
D O I
10.1080/23802359.2017.1334523
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this study, we firstly reported the complete mitochondrial genome of Copadichromis trimaculatus. The whole mitochondrial genome is 16,581 bp in length, including 2 ribosomal RNA genes, 22 transfer RNA genes and 13 protein-coding genes. Its GC content is 46.00%, similar to Copadichromis virginalis (45.74%). We also analyzed its phylogenic relationship with other 14 related species, which would facilitate our understanding of the phylogenic relationship of Cichlidae mitochondrial genome.
引用
收藏
页码:347 / 348
页数:2
相关论文
共 5 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [3] SOAP2: an improved ultrafast tool for short read alignment
    Li, Ruiqiang
    Yu, Chang
    Li, Yingrui
    Lam, Tak-Wah
    Yiu, Siu-Ming
    Kristiansen, Karsten
    Wang, Jun
    [J]. BIOINFORMATICS, 2009, 25 (15) : 1966 - 1967
  • [4] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    Lowe, TM
    Eddy, SR
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
  • [5] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255