The complete mitochondrial genome of the Copadichromis trimaculatus

被引：0

作者：

Wen, Xiangru ^{[1
]}

Wang, Cailin ^{[1
]}

Li, Man ^{[1
]}

Wang, Haiyan ^{[1
]}

Zhang, Rongli ^{[1
]}

机构：

[1] Xuzhou Med Univ, Sch Basic Educ Sci, Xuzhou 221004, Jiangsu, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2017年 / 2卷 / 01期

关键词：

Mitochondrial genome; Copadichromis trimaculatus; phylogenic relationship;

D O I：

10.1080/23802359.2017.1334523

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, we firstly reported the complete mitochondrial genome of Copadichromis trimaculatus. The whole mitochondrial genome is 16,581 bp in length, including 2 ribosomal RNA genes, 22 transfer RNA genes and 13 protein-coding genes. Its GC content is 46.00%, similar to Copadichromis virginalis (45.74%). We also analyzed its phylogenic relationship with other 14 related species, which would facilitate our understanding of the phylogenic relationship of Cichlidae mitochondrial genome.

引用

页码：347 / 348

页数：2

共 5 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2]

Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]

[3] SOAP2: an improved ultrafast tool for short read alignment [J].

Li, Ruiqiang ;

Yu, Chang ;

Li, Yingrui ;

Lam, Tak-Wah ;

Yiu, Siu-Ming ;

Kristiansen, Karsten ;

Wang, Jun .

BIOINFORMATICS, 2009, 25 (15) :1966-1967

[4] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[5] Automatic annotation of organellar genomes with DOGMA [J].

Wyman, SK ;

Jansen, RK ;

Boore, JL .

BIOINFORMATICS, 2004, 20 (17) :3252-3255

← 1 →