Structure-guided design of antibacterials that allosterically inhibit DNA gyrase

被引:23
作者
Thalji, Reema K. [1 ]
Raha, Kaushik [1 ]
Andreotti, Daniele [2 ]
Checchia, Anna [2 ]
Cui, Haifeng [1 ]
Meneghelli, Giovanni [2 ,5 ]
Profeta, Roberto [2 ,5 ]
Tonelli, Federica [2 ]
Tommasi, Simona [2 ,5 ]
Bakshi, Tania [1 ]
Donovan, Brian T. [1 ]
Howells, Alison [3 ]
Jain, Shruti [3 ]
Nixon, Christopher [1 ]
Quinque, Geoffrey [1 ]
McCloskey, Lynn [1 ]
Bax, Benjamin D. [4 ,6 ]
Neu, Margarete [4 ]
Chan, Pan F. [1 ]
Stavenger, Robert A. [1 ]
机构
[1] GlaxoSmithKline, Collegeville, PA 19426 USA
[2] EVOTEC Ctr Drug Discovery & Dev, I-37135 Verona, Italy
[3] Inspiralis Ltd, Innovat Ctr, Norwich NR4 7GJ, Norfolk, England
[4] GlaxoSmithKline, Stevenage SG1 2NYH, Herts, England
[5] FIS, I-36075 Vicenza, Italy
[6] Cardiff Univ, Med Discovery Inst, Main Bldg,Pk Pl, Cardiff CF10 3AT, S Glam, Wales
关键词
Antibacterial; Topoisomerase; CLEAVAGE COMPLEXES;
D O I
10.1016/j.bmcl.2019.03.029
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
A series of DNA gyrase inhibitors were designed based on the X-ray structure of a parent thiophene scaffold with the objective to improve biochemical and whole-cell antibacterial activity, while reducing cardiac ion channel activity. The binding mode and overall design hypothesis of one series was confirmed with a co-crystal structure with DNA gyrase. Although some analogs retained both biochemical activity and whole-cell antibacterial activity, we were unable to significantly improve the activity of the series and analogs retained activity against the cardiac ion channels, therefore we stopped optimization efforts.
引用
收藏
页码:1407 / 1412
页数:6
相关论文
共 16 条
[1]   Responding to the challenge of untreatable gonorrhea: ETX0914, a first-in-class agent with a distinct mechanism-of-action against bacterial Type II topoisomerases [J].
Basarab, Gregory S. ;
Kern, Gunther H. ;
McNulty, John ;
Mueller, John P. ;
Lawrence, Kenneth ;
Vishwanathan, Karthick ;
Alm, Richard A. ;
Barvian, Kevin ;
Doig, Peter ;
Galullo, Vincent ;
Gardner, Humphrey ;
Gowravaram, Madhusudhan ;
Huband, Michael ;
Kimzey, Amy ;
Morningstar, Marshall ;
Kutschke, Amy ;
Lahiri, Sushmita D. ;
Perros, Manos ;
Singh, Renu ;
Schuck, Virna J. A. ;
Tommasi, Ruben ;
Walkup, Grant ;
Newman, Joseph V. .
SCIENTIFIC REPORTS, 2015, 5
[2]   Thiophene antibacterials that allosterically stabilize DNA-cleavage complexes with DNA gyrase [J].
Chan, Pan F. ;
Germe, Thomas ;
Bax, Benjamin D. ;
Huang, Jianzhong ;
Thalji, Reema K. ;
Bacque, Eric ;
Checchia, Anna ;
Chen, Dongzhao ;
Cui, Haifeng ;
Ding, Xiao ;
Ingraham, Karen ;
McCloskey, Lynn ;
Raha, Kaushik ;
Srikannathasan, Velupillai ;
Maxwell, Anthony ;
Stavenger, Robert A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (22) :E4492-E4500
[3]   Optimal synthesis of adjustable planar four-bar crank-rocker type mechanisms for approximate multi-path generation [J].
Chanekar, Prasad Vilas ;
Ghosal, Ashitava .
MECHANISM AND MACHINE THEORY, 2013, 69 :263-277
[4]  
CLSI, 2009, CLSI PUBL
[5]   Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase [J].
Concha, Nestor ;
Huang, Jianzhong ;
Bai, Xiaopeng ;
Benowitz, Andrew ;
Brady, Pat ;
Grady, LaShadric C. ;
Kryn, Luz Helena ;
Holmes, David ;
Ingraham, Karen ;
Jin, Qi ;
Kaushansky, Laura Pothier ;
McCloskey, Lynn ;
Messer, Jeffrey A. ;
O'Keefe, Heather ;
Patel, Amish ;
Satz, Alexander L. ;
Sinnamon, Robert H. ;
Schneck, Jessica ;
Skinner, Steve R. ;
Summerfield, Jennifer ;
Taylor, Amy ;
Taylor, J. David ;
Evindar, Ghotas ;
Stavenger, Robert A. .
JOURNAL OF MEDICINAL CHEMISTRY, 2016, 59 (15) :7299-7304
[6]   Multidrug efflux pumps: structure, function and regulation [J].
Du, Dijun ;
Wang-Kan, Xuan ;
Neuberger, Arthur ;
van Veen, Hendrik W. ;
Pos, Klaas M. ;
Piddock, Laura J. V. ;
Luisi, Ben F. .
NATURE REVIEWS MICROBIOLOGY, 2018, 16 (09) :523-539
[7]   Identification of Quinoline-Based RIP2 Kinase Inhibitors with an Improved Therapeutic Index to the hERG Ion Channel [J].
Haile, Pamela A. ;
Casillas, Linda N. ;
Bury, Michael J. ;
Mehlmann, John F. ;
Singhaus, Robert, Jr. ;
Charnley, Adam K. ;
Hughes, Terry V. ;
DeMartino, Michael P. ;
Wang, Gren Z. ;
Romano, Joseph J. ;
Dong, Xiaoyang ;
Plotnikov, Nikolay V. ;
Lakdawala, Ami S. ;
Convery, Maire A. ;
Votta, Bartholomew J. ;
Lipshutz, David B. ;
Desai, Biva M. ;
Swift, Barbara ;
Capriotti, Carol A. ;
Berger, Scott B. ;
Mahajan, Mukesh K. ;
Reilly, Michael A. ;
Rivera, Elizabeth J. ;
Sun, Helen H. ;
Nagilla, Rakesh ;
LePage, Carol ;
Ouellette, Michael T. ;
Totoritis, Rachel D. ;
Donovan, Brian T. ;
Brown, Barry S. ;
Chaudhary, Khuram W. ;
Gough, Peter J. ;
Bertin, John ;
Marquis, Robert W. .
ACS MEDICINAL CHEMISTRY LETTERS, 2018, 9 (10) :1039-1044
[8]   The crisis of no new antibiotics-what is the way forward? [J].
Piddock, Laura J. V. .
LANCET INFECTIOUS DISEASES, 2012, 12 (03) :249-253
[9]  
President's Council of Advisors on Science and Technology, 2014, REP PRES COMB ANT RE
[10]   Incentivising innovation in antibiotic drug discovery and development: progress, challenges and next steps [J].
Simpkin, Victoria L. ;
Renwick, Matthew J. ;
Kelly, Ruth ;
Mossialos, Elias .
JOURNAL OF ANTIBIOTICS, 2017, 70 (12) :1087-1096